Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.69■□□□□ 0.42
LHX1P48742 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
LHX1P48742 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.69■□□□□ 0.42
LHX1P48742 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LHX1P48742 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.69■□□□□ 0.42
LHX1P48742 GOLGA6L17P-202ENST00000614358 1398 ntBASIC17.69■□□□□ 0.42
LHX1P48742 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LHX1P48742 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LHX1P48742 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
LHX1P48742 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LHX1P48742 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LHX1P48742 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
LHX1P48742 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.69■□□□□ 0.42
LHX1P48742 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LHX1P48742 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LHX1P48742 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.69■□□□□ 0.42
LHX1P48742 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.69■□□□□ 0.42
LHX1P48742 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.69■□□□□ 0.42
LHX1P48742 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.69■□□□□ 0.42
LHX1P48742 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LHX1P48742 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.69■□□□□ 0.42
LHX1P48742 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.69■□□□□ 0.42
LHX1P48742 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.69■□□□□ 0.42
LHX1P48742 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.69■□□□□ 0.42
LHX1P48742 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
LHX1P48742 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
LHX1P48742 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
LHX1P48742 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.69■□□□□ 0.42
LHX1P48742 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.69■□□□□ 0.42
LHX1P48742 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LHX1P48742 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LHX1P48742 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LHX1P48742 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LHX1P48742 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
LHX1P48742 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LHX1P48742 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LHX1P48742 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
LHX1P48742 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX1P48742 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
LHX1P48742 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX1P48742 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LHX1P48742 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX1P48742 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.68■□□□□ 0.42
LHX1P48742 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
LHX1P48742 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX1P48742 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX1P48742 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LHX1P48742 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX1P48742 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX1P48742 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.68■□□□□ 0.42
LHX1P48742 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LHX1P48742 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX1P48742 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
LHX1P48742 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX1P48742 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX1P48742 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LHX1P48742 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.68■□□□□ 0.42
LHX1P48742 TSEN15P1-201ENST00000423257 515 ntBASIC17.68■□□□□ 0.42
LHX1P48742 PMS2P2-201ENST00000425039 1128 ntBASIC17.68■□□□□ 0.42
LHX1P48742 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX1P48742 METTL21AP1-201ENST00000438852 635 ntBASIC17.68■□□□□ 0.42
LHX1P48742 AC069335.1-201ENST00000489972 472 ntBASIC17.68■□□□□ 0.42
LHX1P48742 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.68■□□□□ 0.42
LHX1P48742 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.68■□□□□ 0.42
LHX1P48742 AC093520.2-201ENST00000561830 333 ntBASIC17.68■□□□□ 0.42
LHX1P48742 AC006538.1-201ENST00000567905 1585 ntBASIC17.68■□□□□ 0.42
LHX1P48742 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.68■□□□□ 0.42
LHX1P48742 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.68■□□□□ 0.42
LHX1P48742 AL512652.2-201ENST00000625156 1716 ntBASIC17.68■□□□□ 0.42
LHX1P48742 AC084121.4-201ENST00000641598 221 ntBASIC17.68■□□□□ 0.42
LHX1P48742 AF228730.8-201ENST00000642140 221 ntBASIC17.68■□□□□ 0.42
LHX1P48742 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.68■□□□□ 0.42
LHX1P48742 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
LHX1P48742 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LHX1P48742 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.68■□□□□ 0.42
LHX1P48742 OR6D1P-203ENST00000641209 4860 ntBASIC17.68■□□□□ 0.42
LHX1P48742 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX1P48742 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX1P48742 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX1P48742 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX1P48742 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX1P48742 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
LHX1P48742 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.67■□□□□ 0.42
LHX1P48742 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
LHX1P48742 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LHX1P48742 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LHX1P48742 AL603756.1-201ENST00000606511 2163 ntBASIC17.67■□□□□ 0.42
LHX1P48742 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
LHX1P48742 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
LHX1P48742 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
LHX1P48742 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.67■□□□□ 0.42
LHX1P48742 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
LHX1P48742 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LHX1P48742 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LHX1P48742 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
LHX1P48742 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.67■□□□□ 0.42
LHX1P48742 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LHX1P48742 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.67■□□□□ 0.42
LHX1P48742 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.67■□□□□ 0.42
LHX1P48742 HLA-J-203ENST00000494367 1087 ntBASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms