Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A5P29400 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A5P29400 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A5P29400 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A5P29400 PDIA3P1-201ENST00000471856 1510 ntBASIC19.78■□□□□ 0.76
COL4A5P29400 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A5P29400 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
COL4A5P29400 PCDHB17P-201ENST00000539533 2393 ntBASIC19.78■□□□□ 0.76
COL4A5P29400 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A5P29400 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.78■□□□□ 0.76
COL4A5P29400 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A5P29400 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A5P29400 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC19.78■□□□□ 0.76
COL4A5P29400 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC19.78■□□□□ 0.76
COL4A5P29400 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC19.78■□□□□ 0.76
COL4A5P29400 FAM8A2P-201ENST00000528813 1142 ntBASIC19.78■□□□□ 0.76
COL4A5P29400 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A5P29400 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
COL4A5P29400 AC015936.2-201ENST00000593177 259 ntBASIC19.78■□□□□ 0.76
COL4A5P29400 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.78■□□□□ 0.76
COL4A5P29400 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A5P29400 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A5P29400 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
COL4A5P29400 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
COL4A5P29400 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
COL4A5P29400 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A5P29400 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A5P29400 GNE-204ENST00000539208 2190 ntTSL 2 BASIC19.77■□□□□ 0.76
COL4A5P29400 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC19.77■□□□□ 0.76
COL4A5P29400 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A5P29400 AC092068.3-201ENST00000587894 2016 ntBASIC19.77■□□□□ 0.76
COL4A5P29400 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A5P29400 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19.77■□□□□ 0.76
COL4A5P29400 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A5P29400 AC099336.1-201ENST00000417053 1171 ntBASIC19.77■□□□□ 0.76
COL4A5P29400 MEP1AP4-201ENST00000423244 1087 ntBASIC19.77■□□□□ 0.76
COL4A5P29400 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
COL4A5P29400 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC19.77■□□□□ 0.76
COL4A5P29400 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A5P29400 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A5P29400 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
COL4A5P29400 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC19.77■□□□□ 0.76
COL4A5P29400 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC19.77■□□□□ 0.76
COL4A5P29400 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A5P29400 AC024267.1-201ENST00000582320 895 ntBASIC19.77■□□□□ 0.76
COL4A5P29400 AC074044.1-201ENST00000609673 707 ntBASIC19.77■□□□□ 0.76
COL4A5P29400 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC19.77■□□□□ 0.76
COL4A5P29400 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A5P29400 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
COL4A5P29400 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC19.77■□□□□ 0.75
COL4A5P29400 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL4A5P29400 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.77■□□□□ 0.75
COL4A5P29400 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.75
COL4A5P29400 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL4A5P29400 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL4A5P29400 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.75
COL4A5P29400 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC19.76■□□□□ 0.75
COL4A5P29400 AL512652.2-201ENST00000625156 1716 ntBASIC19.76■□□□□ 0.75
COL4A5P29400 AC093525.8-201ENST00000624099 1342 ntBASIC19.76■□□□□ 0.75
COL4A5P29400 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A5P29400 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A5P29400 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
COL4A5P29400 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC19.76■□□□□ 0.75
COL4A5P29400 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC19.76■□□□□ 0.75
COL4A5P29400 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
COL4A5P29400 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC19.76■□□□□ 0.75
COL4A5P29400 PTK7-212ENST00000476760 902 ntTSL 2 BASIC19.76■□□□□ 0.75
COL4A5P29400 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC19.76■□□□□ 0.75
COL4A5P29400 AL583810.1-201ENST00000553344 1045 ntBASIC19.76■□□□□ 0.75
COL4A5P29400 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC19.76■□□□□ 0.75
COL4A5P29400 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A5P29400 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
COL4A5P29400 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A5P29400 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A5P29400 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
COL4A5P29400 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC19.76■□□□□ 0.75
COL4A5P29400 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A5P29400 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
COL4A5P29400 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
COL4A5P29400 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A5P29400 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A5P29400 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
COL4A5P29400 CROCCP2-202ENST00000412962 2773 ntBASIC19.75■□□□□ 0.75
COL4A5P29400 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A5P29400 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A5P29400 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A5P29400 ACTBP11-201ENST00000436287 1126 ntBASIC19.75■□□□□ 0.75
COL4A5P29400 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A5P29400 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC19.75■□□□□ 0.75
COL4A5P29400 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC19.75■□□□□ 0.75
COL4A5P29400 MIR5189-201ENST00000577370 114 ntBASIC19.75■□□□□ 0.75
COL4A5P29400 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
COL4A5P29400 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC19.75■□□□□ 0.75
COL4A5P29400 AL033527.5-201ENST00000641382 801 ntBASIC19.75■□□□□ 0.75
COL4A5P29400 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC19.75■□□□□ 0.75
COL4A5P29400 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
COL4A5P29400 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC19.75■□□□□ 0.75
COL4A5P29400 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A5P29400 KRT8P44-201ENST00000441609 1350 ntBASIC19.75■□□□□ 0.75
COL4A5P29400 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms