Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.6■□□□□ 0.41
PDGFRAP16234 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PDGFRAP16234 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.6■□□□□ 0.41
PDGFRAP16234 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PDGFRAP16234 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDGFRAP16234 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.59■□□□□ 0.41
PDGFRAP16234 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.59■□□□□ 0.41
PDGFRAP16234 AL671710.1-201ENST00000610245 2349 ntBASIC17.59■□□□□ 0.41
PDGFRAP16234 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.59■□□□□ 0.41
PDGFRAP16234 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PDGFRAP16234 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDGFRAP16234 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDGFRAP16234 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDGFRAP16234 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDGFRAP16234 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDGFRAP16234 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
PDGFRAP16234 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.59■□□□□ 0.41
PDGFRAP16234 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDGFRAP16234 PMS2P7-201ENST00000506558 1336 ntBASIC17.59■□□□□ 0.41
PDGFRAP16234 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PDGFRAP16234 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.59■□□□□ 0.41
PDGFRAP16234 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDGFRAP16234 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDGFRAP16234 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
PDGFRAP16234 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDGFRAP16234 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDGFRAP16234 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDGFRAP16234 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.59■□□□□ 0.41
PDGFRAP16234 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.59■□□□□ 0.41
PDGFRAP16234 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.59■□□□□ 0.41
PDGFRAP16234 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.59■□□□□ 0.41
PDGFRAP16234 HLA-J-202ENST00000469281 1241 ntBASIC17.59■□□□□ 0.41
PDGFRAP16234 CXCL1P1-201ENST00000502804 216 ntBASIC17.59■□□□□ 0.41
PDGFRAP16234 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.59■□□□□ 0.41
PDGFRAP16234 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.59■□□□□ 0.41
PDGFRAP16234 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.59■□□□□ 0.41
PDGFRAP16234 AC087641.1-201ENST00000557561 1021 ntBASIC17.59■□□□□ 0.41
PDGFRAP16234 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.59■□□□□ 0.41
PDGFRAP16234 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.59■□□□□ 0.41
PDGFRAP16234 CYP2A7P1-201ENST00000595391 815 ntBASIC17.59■□□□□ 0.41
PDGFRAP16234 ACTL9-202ENST00000612068 1252 ntBASIC17.59■□□□□ 0.41
PDGFRAP16234 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.59■□□□□ 0.41
PDGFRAP16234 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
PDGFRAP16234 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDGFRAP16234 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
PDGFRAP16234 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.59■□□□□ 0.41
PDGFRAP16234 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDGFRAP16234 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDGFRAP16234 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDGFRAP16234 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.58■□□□□ 0.41
PDGFRAP16234 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
PDGFRAP16234 SNX33P1-201ENST00000592116 1762 ntBASIC17.58■□□□□ 0.41
PDGFRAP16234 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.58■□□□□ 0.41
PDGFRAP16234 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
PDGFRAP16234 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PDGFRAP16234 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.58■□□□□ 0.41
PDGFRAP16234 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PDGFRAP16234 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
PDGFRAP16234 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PDGFRAP16234 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
PDGFRAP16234 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PDGFRAP16234 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
PDGFRAP16234 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.58■□□□□ 0.41
PDGFRAP16234 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.58■□□□□ 0.4
PDGFRAP16234 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
PDGFRAP16234 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
PDGFRAP16234 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.58■□□□□ 0.4
PDGFRAP16234 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
PDGFRAP16234 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
PDGFRAP16234 HCG4-201ENST00000418983 998 ntBASIC17.58■□□□□ 0.4
PDGFRAP16234 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.58■□□□□ 0.4
PDGFRAP16234 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.58■□□□□ 0.4
PDGFRAP16234 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
PDGFRAP16234 RNA5SP416-201ENST00000516838 111 ntBASIC17.58■□□□□ 0.4
PDGFRAP16234 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.58■□□□□ 0.4
PDGFRAP16234 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PDGFRAP16234 AP001350.2-201ENST00000625104 1094 ntBASIC17.58■□□□□ 0.4
PDGFRAP16234 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PDGFRAP16234 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PDGFRAP16234 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PDGFRAP16234 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PDGFRAP16234 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PDGFRAP16234 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
PDGFRAP16234 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PDGFRAP16234 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PDGFRAP16234 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PDGFRAP16234 AL118508.1-201ENST00000613502 2345 ntBASIC17.58■□□□□ 0.4
PDGFRAP16234 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
PDGFRAP16234 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.58■□□□□ 0.4
PDGFRAP16234 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PDGFRAP16234 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
PDGFRAP16234 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.57■□□□□ 0.4
PDGFRAP16234 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.57■□□□□ 0.4
PDGFRAP16234 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PDGFRAP16234 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PDGFRAP16234 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PDGFRAP16234 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.57■□□□□ 0.4
PDGFRAP16234 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PDGFRAP16234 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PDGFRAP16234 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms