Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MIR4741-201ENST00000579822 90 ntBASIC17.14■□□□□ 0.33
COL6A3P12111 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC17.14■□□□□ 0.33
COL6A3P12111 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC17.14■□□□□ 0.33
COL6A3P12111 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC17.14■□□□□ 0.33
COL6A3P12111 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL6A3P12111 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL6A3P12111 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.13■□□□□ 0.33
COL6A3P12111 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.13■□□□□ 0.33
COL6A3P12111 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL6A3P12111 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL6A3P12111 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL6A3P12111 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC17.13■□□□□ 0.33
COL6A3P12111 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.13■□□□□ 0.33
COL6A3P12111 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC17.13■□□□□ 0.33
COL6A3P12111 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
COL6A3P12111 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC17.13■□□□□ 0.33
COL6A3P12111 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.13■□□□□ 0.33
COL6A3P12111 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL6A3P12111 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
COL6A3P12111 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL6A3P12111 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.13■□□□□ 0.33
COL6A3P12111 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
COL6A3P12111 MTX1P1-201ENST00000440904 838 ntBASIC17.13■□□□□ 0.33
COL6A3P12111 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC17.13■□□□□ 0.33
COL6A3P12111 RNA5SP410-201ENST00000516285 106 ntBASIC17.13■□□□□ 0.33
COL6A3P12111 AL451050.2-201ENST00000606967 682 ntBASIC17.13■□□□□ 0.33
COL6A3P12111 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL6A3P12111 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL6A3P12111 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A3P12111 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.12■□□□□ 0.33
COL6A3P12111 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
COL6A3P12111 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC17.12■□□□□ 0.33
COL6A3P12111 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC17.12■□□□□ 0.33
COL6A3P12111 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC17.12■□□□□ 0.33
COL6A3P12111 LY6E-208ENST00000520531 490 ntTSL 2 BASIC17.12■□□□□ 0.33
COL6A3P12111 RN7SL574P-201ENST00000581512 297 ntBASIC17.12■□□□□ 0.33
COL6A3P12111 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.12■□□□□ 0.33
COL6A3P12111 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
COL6A3P12111 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A3P12111 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
COL6A3P12111 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A3P12111 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
COL6A3P12111 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A3P12111 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC17.12■□□□□ 0.33
COL6A3P12111 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A3P12111 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC17.12■□□□□ 0.33
COL6A3P12111 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC17.12■□□□□ 0.33
COL6A3P12111 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC17.12■□□□□ 0.33
COL6A3P12111 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC17.12■□□□□ 0.33
COL6A3P12111 AC011491.1-203ENST00000637688 543 ntBASIC17.12■□□□□ 0.33
COL6A3P12111 HADH-212ENST00000638621 741 ntTSL 5 BASIC17.12■□□□□ 0.33
COL6A3P12111 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.12■□□□□ 0.33
COL6A3P12111 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.12■□□□□ 0.33
COL6A3P12111 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
COL6A3P12111 CROCCP3-202ENST00000420820 1947 ntBASIC17.12■□□□□ 0.33
COL6A3P12111 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A3P12111 SDCCAG3P2-201ENST00000326105 1023 ntBASIC17.12■□□□□ 0.33
COL6A3P12111 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
COL6A3P12111 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A3P12111 AC016700.1-201ENST00000429424 312 ntBASIC17.12■□□□□ 0.33
COL6A3P12111 SPTLC1P5-201ENST00000450718 252 ntBASIC17.12■□□□□ 0.33
COL6A3P12111 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC17.12■□□□□ 0.33
COL6A3P12111 AL096828.3-201ENST00000615354 462 ntBASIC17.12■□□□□ 0.33
COL6A3P12111 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
COL6A3P12111 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A3P12111 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A3P12111 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A3P12111 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
COL6A3P12111 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A3P12111 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A3P12111 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A3P12111 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC17.11■□□□□ 0.33
COL6A3P12111 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC17.11■□□□□ 0.33
COL6A3P12111 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.11■□□□□ 0.33
COL6A3P12111 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC17.11■□□□□ 0.33
COL6A3P12111 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC17.11■□□□□ 0.33
COL6A3P12111 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
COL6A3P12111 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
COL6A3P12111 DEK-201ENST00000244776 1441 ntTSL 2 BASIC17.11■□□□□ 0.33
COL6A3P12111 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
COL6A3P12111 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC17.11■□□□□ 0.33
COL6A3P12111 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
COL6A3P12111 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.11■□□□□ 0.33
COL6A3P12111 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A3P12111 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
COL6A3P12111 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A3P12111 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
COL6A3P12111 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
COL6A3P12111 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A3P12111 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A3P12111 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC17.11■□□□□ 0.33
COL6A3P12111 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC17.11■□□□□ 0.33
COL6A3P12111 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A3P12111 CU633904.3-201ENST00000624042 1029 ntBASIC17.11■□□□□ 0.33
COL6A3P12111 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
COL6A3P12111 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC17.1■□□□□ 0.33
COL6A3P12111 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC17.1■□□□□ 0.33
COL6A3P12111 WDR7-208ENST00000589935 544 ntTSL 4 BASIC17.1■□□□□ 0.33
COL6A3P12111 AP003392.6-201ENST00000607709 325 ntBASIC17.1■□□□□ 0.33
COL6A3P12111 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms