Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AL513480.1-201ENST00000451731 511 ntBASIC17.58■□□□□ 0.4
APOEP02649 PGAM5P1-201ENST00000518923 814 ntBASIC17.58■□□□□ 0.4
APOEP02649 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.58■□□□□ 0.4
APOEP02649 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
APOEP02649 DUX4L17-201ENST00000557360 1267 ntBASIC17.58■□□□□ 0.4
APOEP02649 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
APOEP02649 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.58■□□□□ 0.4
APOEP02649 AC005412.3-201ENST00000580309 715 ntBASIC17.58■□□□□ 0.4
APOEP02649 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.58■□□□□ 0.4
APOEP02649 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
APOEP02649 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.58■□□□□ 0.4
APOEP02649 AC023141.13-201ENST00000604991 943 ntBASIC17.58■□□□□ 0.4
APOEP02649 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.58■□□□□ 0.4
APOEP02649 ACTL9-202ENST00000612068 1252 ntBASIC17.58■□□□□ 0.4
APOEP02649 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.58■□□□□ 0.4
APOEP02649 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
APOEP02649 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.58■□□□□ 0.4
APOEP02649 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
APOEP02649 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
APOEP02649 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
APOEP02649 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
APOEP02649 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.57■□□□□ 0.4
APOEP02649 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.57■□□□□ 0.4
APOEP02649 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.57■□□□□ 0.4
APOEP02649 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
APOEP02649 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
APOEP02649 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
APOEP02649 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.57■□□□□ 0.4
APOEP02649 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
APOEP02649 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
APOEP02649 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
APOEP02649 FLJ38576-201ENST00000623820 2459 ntBASIC17.57■□□□□ 0.4
APOEP02649 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.57■□□□□ 0.4
APOEP02649 BCAR1-209ENST00000546196 1340 ntBASIC17.57■□□□□ 0.4
APOEP02649 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
APOEP02649 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.57■□□□□ 0.4
APOEP02649 RHOQP3-201ENST00000437982 621 ntBASIC17.57■□□□□ 0.4
APOEP02649 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.57■□□□□ 0.4
APOEP02649 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.57■□□□□ 0.4
APOEP02649 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.57■□□□□ 0.4
APOEP02649 AC002347.1-201ENST00000569543 541 ntBASIC17.57■□□□□ 0.4
APOEP02649 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
APOEP02649 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.57■□□□□ 0.4
APOEP02649 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
APOEP02649 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
APOEP02649 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.57■□□□□ 0.4
APOEP02649 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.57■□□□□ 0.4
APOEP02649 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.57■□□□□ 0.4
APOEP02649 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
APOEP02649 PCDHA14-201ENST00000506751 2298 ntBASIC17.57■□□□□ 0.4
APOEP02649 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
APOEP02649 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
APOEP02649 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
APOEP02649 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
APOEP02649 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
APOEP02649 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.57■□□□□ 0.4
APOEP02649 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
APOEP02649 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
APOEP02649 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
APOEP02649 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
APOEP02649 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
APOEP02649 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
APOEP02649 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
APOEP02649 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.57■□□□□ 0.4
APOEP02649 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
APOEP02649 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
APOEP02649 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.56■□□□□ 0.4
APOEP02649 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
APOEP02649 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
APOEP02649 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
APOEP02649 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
APOEP02649 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
APOEP02649 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
APOEP02649 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
APOEP02649 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
APOEP02649 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
APOEP02649 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.56■□□□□ 0.4
APOEP02649 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
APOEP02649 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
APOEP02649 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
APOEP02649 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
APOEP02649 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.56■□□□□ 0.4
APOEP02649 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
APOEP02649 AC091167.2-201ENST00000579581 588 ntBASIC17.56■□□□□ 0.4
APOEP02649 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
APOEP02649 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.56■□□□□ 0.4
APOEP02649 AC004877.2-201ENST00000623941 599 ntBASIC17.56■□□□□ 0.4
APOEP02649 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
APOEP02649 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
APOEP02649 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
APOEP02649 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
APOEP02649 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
APOEP02649 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
APOEP02649 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
APOEP02649 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
APOEP02649 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
APOEP02649 AL353732.1-201ENST00000569618 1459 ntBASIC17.56■□□□□ 0.4
APOEP02649 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
APOEP02649 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
APOEP02649 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms