Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
COL2A1P02458 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
COL2A1P02458 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
COL2A1P02458 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL2A1P02458 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
COL2A1P02458 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL2A1P02458 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL2A1P02458 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC19.31■□□□□ 0.68
COL2A1P02458 AC114501.2-201ENST00000439631 535 ntBASIC19.31■□□□□ 0.68
COL2A1P02458 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC19.31■□□□□ 0.68
COL2A1P02458 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL2A1P02458 AL596325.1-201ENST00000563991 1082 ntBASIC19.31■□□□□ 0.68
COL2A1P02458 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC19.31■□□□□ 0.68
COL2A1P02458 ARL16-202ENST00000570561 768 ntTSL 2 BASIC19.31■□□□□ 0.68
COL2A1P02458 AC140912.1-201ENST00000577171 1054 ntBASIC19.31■□□□□ 0.68
COL2A1P02458 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC19.31■□□□□ 0.68
COL2A1P02458 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC19.31■□□□□ 0.68
COL2A1P02458 IMPDH1P4-201ENST00000445028 1534 ntBASIC19.31■□□□□ 0.68
COL2A1P02458 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.31■□□□□ 0.68
COL2A1P02458 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL2A1P02458 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.31■□□□□ 0.68
COL2A1P02458 PCGF3-213ENST00000620529 1899 ntBASIC19.31■□□□□ 0.68
COL2A1P02458 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL2A1P02458 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC19.31■□□□□ 0.68
COL2A1P02458 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL2A1P02458 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL2A1P02458 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
COL2A1P02458 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.3■□□□□ 0.68
COL2A1P02458 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC19.3■□□□□ 0.68
COL2A1P02458 AL133373.2-201ENST00000623187 2828 ntBASIC19.3■□□□□ 0.68
COL2A1P02458 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL2A1P02458 RELA-227ENST00000615805 2236 ntTSL 5 BASIC19.3■□□□□ 0.68
COL2A1P02458 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.3■□□□□ 0.68
COL2A1P02458 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC19.3■□□□□ 0.68
COL2A1P02458 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC19.3■□□□□ 0.68
COL2A1P02458 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC19.3■□□□□ 0.68
COL2A1P02458 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
COL2A1P02458 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
COL2A1P02458 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC19.3■□□□□ 0.68
COL2A1P02458 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC19.3■□□□□ 0.68
COL2A1P02458 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC19.3■□□□□ 0.68
COL2A1P02458 API5-211ENST00000534695 560 ntTSL 5 BASIC19.3■□□□□ 0.68
COL2A1P02458 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC19.3■□□□□ 0.68
COL2A1P02458 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC19.3■□□□□ 0.68
COL2A1P02458 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL2A1P02458 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL2A1P02458 AL645608.8-201ENST00000606034 2086 ntBASIC19.3■□□□□ 0.68
COL2A1P02458 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
COL2A1P02458 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL2A1P02458 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL2A1P02458 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL2A1P02458 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.3■□□□□ 0.68
COL2A1P02458 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL2A1P02458 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
COL2A1P02458 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL2A1P02458 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL2A1P02458 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC19.3■□□□□ 0.68
COL2A1P02458 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL2A1P02458 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
COL2A1P02458 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.3■□□□□ 0.68
COL2A1P02458 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
COL2A1P02458 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
COL2A1P02458 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL2A1P02458 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL2A1P02458 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL2A1P02458 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL2A1P02458 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL2A1P02458 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC19.29■□□□□ 0.68
COL2A1P02458 RASL12-203ENST00000434605 982 ntTSL 2 BASIC19.29■□□□□ 0.68
COL2A1P02458 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC19.29■□□□□ 0.68
COL2A1P02458 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC19.29■□□□□ 0.68
COL2A1P02458 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL2A1P02458 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC19.29■□□□□ 0.68
COL2A1P02458 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL2A1P02458 SRP9-204ENST00000619790 377 ntTSL 2 BASIC19.29■□□□□ 0.68
COL2A1P02458 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
COL2A1P02458 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
COL2A1P02458 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC19.29■□□□□ 0.68
COL2A1P02458 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL2A1P02458 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL2A1P02458 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC19.29■□□□□ 0.68
COL2A1P02458 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC19.29■□□□□ 0.68
COL2A1P02458 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL2A1P02458 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
COL2A1P02458 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL2A1P02458 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC19.29■□□□□ 0.68
COL2A1P02458 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
COL2A1P02458 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL2A1P02458 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.29■□□□□ 0.68
COL2A1P02458 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL2A1P02458 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC19.29■□□□□ 0.68
COL2A1P02458 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.29■□□□□ 0.68
COL2A1P02458 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL2A1P02458 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL2A1P02458 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
COL2A1P02458 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL2A1P02458 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL2A1P02458 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL2A1P02458 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL2A1P02458 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms