Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC14.79□□□□□ -0.04
LMX1BO60663 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC14.79□□□□□ -0.04
LMX1BO60663 SART3-203ENST00000546611 1184 ntBASIC14.79□□□□□ -0.04
LMX1BO60663 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC14.79□□□□□ -0.04
LMX1BO60663 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC14.79□□□□□ -0.04
LMX1BO60663 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC14.79□□□□□ -0.04
LMX1BO60663 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC14.79□□□□□ -0.04
LMX1BO60663 MIR3687-2-201ENST00000577708 61 ntBASIC14.79□□□□□ -0.04
LMX1BO60663 PNMT-203ENST00000581428 677 ntTSL 2 BASIC14.79□□□□□ -0.04
LMX1BO60663 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC14.79□□□□□ -0.04
LMX1BO60663 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LMX1BO60663 AC026691.1-201ENST00000602502 2017 ntBASIC14.79□□□□□ -0.04
LMX1BO60663 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC14.79□□□□□ -0.04
LMX1BO60663 MIR3687-1-201ENST00000614492 61 ntBASIC14.79□□□□□ -0.04
LMX1BO60663 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC14.79□□□□□ -0.04
LMX1BO60663 AL391005.1-201ENST00000623953 2435 ntBASIC14.79□□□□□ -0.04
LMX1BO60663 AC097637.2-201ENST00000624096 1997 ntBASIC14.79□□□□□ -0.04
LMX1BO60663 AP000867.4-201ENST00000641616 219 ntBASIC14.79□□□□□ -0.04
LMX1BO60663 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LMX1BO60663 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LMX1BO60663 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC14.79□□□□□ -0.04
LMX1BO60663 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LMX1BO60663 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LMX1BO60663 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC14.79□□□□□ -0.04
LMX1BO60663 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC14.79□□□□□ -0.04
LMX1BO60663 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
LMX1BO60663 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
LMX1BO60663 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC14.78□□□□□ -0.04
LMX1BO60663 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
LMX1BO60663 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC14.78□□□□□ -0.04
LMX1BO60663 SPDYE21P-201ENST00000413323 827 ntBASIC14.78□□□□□ -0.04
LMX1BO60663 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC14.78□□□□□ -0.04
LMX1BO60663 AL020989.1-201ENST00000422979 469 ntBASIC14.78□□□□□ -0.04
LMX1BO60663 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC14.78□□□□□ -0.04
LMX1BO60663 AC098831.1-202ENST00000438821 336 ntBASIC14.78□□□□□ -0.04
LMX1BO60663 KRT18P3-201ENST00000451602 1288 ntBASIC14.78□□□□□ -0.04
LMX1BO60663 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC14.78□□□□□ -0.04
LMX1BO60663 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC14.78□□□□□ -0.04
LMX1BO60663 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC14.78□□□□□ -0.04
LMX1BO60663 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC14.78□□□□□ -0.04
LMX1BO60663 AC079781.4-201ENST00000641908 219 ntBASIC14.78□□□□□ -0.04
LMX1BO60663 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
LMX1BO60663 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
LMX1BO60663 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 PCDHA1-201ENST00000378133 2726 ntBASIC14.78□□□□□ -0.04
LMX1BO60663 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LMX1BO60663 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
LMX1BO60663 HNRNPRP1-201ENST00000453465 1695 ntBASIC14.77□□□□□ -0.04
LMX1BO60663 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LMX1BO60663 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.77□□□□□ -0.04
LMX1BO60663 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LMX1BO60663 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LMX1BO60663 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LMX1BO60663 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LMX1BO60663 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
LMX1BO60663 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC14.77□□□□□ -0.04
LMX1BO60663 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC14.77□□□□□ -0.04
LMX1BO60663 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
LMX1BO60663 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LMX1BO60663 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LMX1BO60663 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
LMX1BO60663 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LMX1BO60663 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
LMX1BO60663 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
LMX1BO60663 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
LMX1BO60663 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC14.77□□□□□ -0.05
LMX1BO60663 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
LMX1BO60663 SIGLEC30P-201ENST00000455569 941 ntBASIC14.77□□□□□ -0.05
LMX1BO60663 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC14.77□□□□□ -0.05
LMX1BO60663 CYB561-217ENST00000582997 877 ntTSL 5 BASIC14.77□□□□□ -0.05
LMX1BO60663 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
LMX1BO60663 COPE-211ENST00000600932 1144 ntTSL 5 BASIC14.77□□□□□ -0.05
LMX1BO60663 Z83851.2-201ENST00000609564 659 ntBASIC14.77□□□□□ -0.05
LMX1BO60663 AC055717.3-201ENST00000622967 595 ntBASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms