Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RAB17-203ENST00000409576 466 ntTSL 3 BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 FAM197Y8-203ENST00000450145 560 ntBASIC13.61□□□□□ -0.23
FOXA2Q9Y261 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 MTDHP4-201ENST00000600287 670 ntBASIC13.61□□□□□ -0.23
FOXA2Q9Y261 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 AL031008.1-201ENST00000619963 541 ntBASIC13.61□□□□□ -0.23
FOXA2Q9Y261 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 KRT8P49-201ENST00000604166 1432 ntBASIC13.61□□□□□ -0.23
FOXA2Q9Y261 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 GID4-202ENST00000376345 1391 ntTSL 3 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 NABP1-203ENST00000409510 843 ntTSL 5 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 NCF1C-201ENST00000438382 1427 ntBASIC13.6□□□□□ -0.23
FOXA2Q9Y261 AC079781.3-201ENST00000449110 356 ntBASIC13.6□□□□□ -0.23
FOXA2Q9Y261 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 RNF151-202ENST00000569210 853 ntTSL 2 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 AL589182.2-201ENST00000619332 1049 ntBASIC13.6□□□□□ -0.23
FOXA2Q9Y261 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 AL139011.1-202ENST00000642063 584 ntBASIC13.6□□□□□ -0.23
FOXA2Q9Y261 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA2Q9Y261 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 RPS2P28-201ENST00000314255 741 ntBASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms