Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 AL355306.1-201ENST00000415580 579 ntBASIC16.85■□□□□ 0.29
DKK3Q9UBP4 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 DNAJB3-202ENST00000449667 1266 ntBASIC16.85■□□□□ 0.29
DKK3Q9UBP4 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.85■□□□□ 0.29
DKK3Q9UBP4 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
DKK3Q9UBP4 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.84■□□□□ 0.29
DKK3Q9UBP4 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 AL671277.1-201ENST00000429656 993 ntBASIC16.84■□□□□ 0.29
DKK3Q9UBP4 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 AL139011.1-202ENST00000642063 584 ntBASIC16.84■□□□□ 0.29
DKK3Q9UBP4 AKAP8P1-201ENST00000434743 1349 ntBASIC16.84■□□□□ 0.29
DKK3Q9UBP4 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 AL162727.3-201ENST00000635661 2787 ntBASIC16.84■□□□□ 0.29
DKK3Q9UBP4 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 AC060834.1-201ENST00000443027 2032 ntBASIC16.84■□□□□ 0.29
DKK3Q9UBP4 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 AP001094.4-201ENST00000579008 2176 ntBASIC16.84■□□□□ 0.29
DKK3Q9UBP4 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
DKK3Q9UBP4 PCDHB17P-201ENST00000539533 2393 ntBASIC16.84■□□□□ 0.29
DKK3Q9UBP4 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
DKK3Q9UBP4 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.83■□□□□ 0.29
DKK3Q9UBP4 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
DKK3Q9UBP4 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
DKK3Q9UBP4 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms