Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 SPDYE11-202ENST00000450699 704 ntBASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 TIMM8BP1-201ENST00000452384 211 ntBASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 AC079140.1-201ENST00000508039 487 ntBASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 AC025678.2-201ENST00000562061 970 ntBASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 SPDYE9P-201ENST00000570642 692 ntBASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 SPDYE10P-202ENST00000612005 668 ntBASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 SPDYE8P-202ENST00000612377 668 ntBASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 AC084121.4-201ENST00000641598 221 ntBASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 AF228730.8-201ENST00000642140 221 ntBASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 MTRF1LP2-201ENST00000506027 1122 ntBASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 SLC22A20-204ENST00000530038 1673 ntBASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 AC011676.5-201ENST00000624864 2660 ntBASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
TRAIPQ9BWF2 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 AC109322.1-201ENST00000524499 1264 ntBASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 AL512356.2-201ENST00000546955 174 ntBASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 AL135744.1-201ENST00000565098 629 ntBASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRAIPQ9BWF2 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAIPQ9BWF2 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAIPQ9BWF2 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRAIPQ9BWF2 FRMD8P1-201ENST00000440433 1524 ntBASIC18.34■□□□□ 0.53
TRAIPQ9BWF2 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAIPQ9BWF2 FOS-208ENST00000555686 1496 ntTSL 2 BASIC18.34■□□□□ 0.53
TRAIPQ9BWF2 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
TRAIPQ9BWF2 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.34■□□□□ 0.53
TRAIPQ9BWF2 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms