Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 CRCP-205ENST00000431089 942 ntTSL 2 BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 RPL13AP23-201ENST00000480739 586 ntBASIC12.98□□□□□ -0.33
CCDC140Q96MF4 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 SLC25A1P1-201ENST00000528351 927 ntBASIC12.98□□□□□ -0.33
CCDC140Q96MF4 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 WT1-AS_2.1-201ENST00000613208 137 ntBASIC12.98□□□□□ -0.33
CCDC140Q96MF4 BX640515.1-201ENST00000617215 977 ntBASIC12.98□□□□□ -0.33
CCDC140Q96MF4 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 HARS-203ENST00000431330 1774 ntTSL 2 BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 AL512652.2-201ENST00000625156 1716 ntBASIC12.98□□□□□ -0.33
CCDC140Q96MF4 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC140Q96MF4 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 WDR53-204ENST00000433160 887 ntTSL 5 BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 AL513480.1-201ENST00000451731 511 ntBASIC12.97□□□□□ -0.33
CCDC140Q96MF4 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 CD63-210ENST00000550776 870 ntTSL 5 BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 MIR4515-201ENST00000584082 81 ntBASIC12.97□□□□□ -0.33
CCDC140Q96MF4 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 AC064836.3-201ENST00000607928 673 ntBASIC12.97□□□□□ -0.33
CCDC140Q96MF4 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 AC079328.2-201ENST00000561241 3354 ntBASIC12.97□□□□□ -0.33
CCDC140Q96MF4 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC140Q96MF4 AL031731.1-201ENST00000642131 2094 ntBASIC12.97□□□□□ -0.33
CCDC140Q96MF4 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 SLC9A3P2-201ENST00000447821 2021 ntBASIC12.96□□□□□ -0.33
CCDC140Q96MF4 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 CES3-203ENST00000543856 3178 ntTSL 2 BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC12.96□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms