Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
LINC00477Q96M19 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC12.62□□□□□ -0.39
LINC00477Q96M19 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC12.62□□□□□ -0.39
LINC00477Q96M19 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 ISCU-203ENST00000431221 799 ntTSL 2 BASIC12.62□□□□□ -0.39
LINC00477Q96M19 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC12.62□□□□□ -0.39
LINC00477Q96M19 MIR3180-1-201ENST00000580374 94 ntBASIC12.62□□□□□ -0.39
LINC00477Q96M19 MIR3180-3-201ENST00000584616 94 ntBASIC12.62□□□□□ -0.39
LINC00477Q96M19 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC12.62□□□□□ -0.39
LINC00477Q96M19 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC12.62□□□□□ -0.39
LINC00477Q96M19 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
LINC00477Q96M19 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
LINC00477Q96M19 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC12.62□□□□□ -0.39
LINC00477Q96M19 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC12.62□□□□□ -0.39
LINC00477Q96M19 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC12.62□□□□□ -0.39
LINC00477Q96M19 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC12.62□□□□□ -0.39
LINC00477Q96M19 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC12.62□□□□□ -0.39
LINC00477Q96M19 GCK-209ENST00000616242 2260 ntTSL 5 BASIC12.62□□□□□ -0.39
LINC00477Q96M19 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 MED16-201ENST00000269814 1199 ntTSL 5 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 NUS1P2-201ENST00000417358 873 ntBASIC12.61□□□□□ -0.39
LINC00477Q96M19 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 FICD-205ENST00000552758 603 ntTSL 2 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 AL022326.1-202ENST00000641533 845 ntBASIC12.61□□□□□ -0.39
LINC00477Q96M19 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 PC-204ENST00000524491 1714 ntTSL 2 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC12.61□□□□□ -0.39
LINC00477Q96M19 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00477Q96M19 BANP-204ENST00000393208 2283 ntTSL 2 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms