Protein–RNA interactions for Protein: Q2I0M5

RSPO4, R-spondin-4, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO4Q2I0M5 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 SLC25A24P2-201ENST00000415059 510 ntBASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 AL512361.1-201ENST00000554200 418 ntBASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 AL133215.2-201ENST00000609242 977 ntBASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 AL133373.2-201ENST00000623187 2828 ntBASIC16.14■□□□□ 0.17
RSPO4Q2I0M5 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 MIR663B-201ENST00000408361 115 ntBASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 AL096828.2-201ENST00000567259 1965 ntBASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RSPO4Q2I0M5 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 CSF2RBP1-201ENST00000447905 391 ntBASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 KRT18P34-201ENST00000488218 1270 ntBASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 BANF1P1-201ENST00000553684 263 ntBASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 AC010319.3-201ENST00000597028 470 ntBASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RSPO4Q2I0M5 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms