Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A4P53420 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A4P53420 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A4P53420 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A4P53420 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A4P53420 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A4P53420 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
COL4A4P53420 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.69■□□□□ 0.42
COL4A4P53420 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A4P53420 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A4P53420 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC17.69■□□□□ 0.42
COL4A4P53420 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC17.69■□□□□ 0.42
COL4A4P53420 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A4P53420 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A4P53420 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
COL4A4P53420 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A4P53420 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.69■□□□□ 0.42
COL4A4P53420 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
COL4A4P53420 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC17.69■□□□□ 0.42
COL4A4P53420 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A4P53420 AL589739.1-201ENST00000607720 493 ntBASIC17.69■□□□□ 0.42
COL4A4P53420 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC17.69■□□□□ 0.42
COL4A4P53420 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A4P53420 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A4P53420 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A4P53420 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A4P53420 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A4P53420 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A4P53420 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.68■□□□□ 0.42
COL4A4P53420 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A4P53420 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A4P53420 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A4P53420 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC17.68■□□□□ 0.42
COL4A4P53420 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A4P53420 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.68■□□□□ 0.42
COL4A4P53420 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.68■□□□□ 0.42
COL4A4P53420 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A4P53420 AC093004.1-201ENST00000508850 424 ntBASIC17.68■□□□□ 0.42
COL4A4P53420 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC17.68■□□□□ 0.42
COL4A4P53420 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC17.68■□□□□ 0.42
COL4A4P53420 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC17.68■□□□□ 0.42
COL4A4P53420 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.68■□□□□ 0.42
COL4A4P53420 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A4P53420 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.68■□□□□ 0.42
COL4A4P53420 RN7SL828P-201ENST00000607615 303 ntBASIC17.68■□□□□ 0.42
COL4A4P53420 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
COL4A4P53420 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
COL4A4P53420 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.68■□□□□ 0.42
COL4A4P53420 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A4P53420 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A4P53420 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.68■□□□□ 0.42
COL4A4P53420 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
COL4A4P53420 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A4P53420 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A4P53420 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
COL4A4P53420 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.68■□□□□ 0.42
COL4A4P53420 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A4P53420 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
COL4A4P53420 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 ANKRD19P-201ENST00000338192 862 ntBASIC17.67■□□□□ 0.42
COL4A4P53420 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
COL4A4P53420 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC17.67■□□□□ 0.42
COL4A4P53420 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC17.67■□□□□ 0.42
COL4A4P53420 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC17.67■□□□□ 0.42
COL4A4P53420 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
COL4A4P53420 AC092552.1-201ENST00000547243 906 ntBASIC17.67■□□□□ 0.42
COL4A4P53420 AL079307.3-201ENST00000556114 283 ntBASIC17.67■□□□□ 0.42
COL4A4P53420 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC17.67■□□□□ 0.42
COL4A4P53420 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.67■□□□□ 0.42
COL4A4P53420 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 BTBD7P1-201ENST00000447253 1453 ntBASIC17.67■□□□□ 0.42
COL4A4P53420 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.67■□□□□ 0.42
COL4A4P53420 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
COL4A4P53420 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.67■□□□□ 0.42
COL4A4P53420 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.67■□□□□ 0.42
COL4A4P53420 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 KRT18P34-201ENST00000488218 1270 ntBASIC17.67■□□□□ 0.42
COL4A4P53420 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC17.67■□□□□ 0.42
COL4A4P53420 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.67■□□□□ 0.42
COL4A4P53420 MIR4259-201ENST00000584466 101 ntBASIC17.67■□□□□ 0.42
COL4A4P53420 TUBB8P12-201ENST00000308911 1335 ntBASIC17.67■□□□□ 0.42
COL4A4P53420 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC17.67■□□□□ 0.42
COL4A4P53420 TUBB7P-202ENST00000428444 1305 ntBASIC17.67■□□□□ 0.42
COL4A4P53420 TUBB8P7-204ENST00000567960 1332 ntBASIC17.67■□□□□ 0.42
COL4A4P53420 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms