Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.42■□□□□ 0.38
PTPN9P43378 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.42■□□□□ 0.38
PTPN9P43378 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.42■□□□□ 0.38
PTPN9P43378 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.42■□□□□ 0.38
PTPN9P43378 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
PTPN9P43378 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
PTPN9P43378 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
PTPN9P43378 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.42■□□□□ 0.38
PTPN9P43378 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.42■□□□□ 0.38
PTPN9P43378 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.42■□□□□ 0.38
PTPN9P43378 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
PTPN9P43378 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.42■□□□□ 0.38
PTPN9P43378 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.42■□□□□ 0.38
PTPN9P43378 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.42■□□□□ 0.38
PTPN9P43378 AC018845.2-201ENST00000568326 409 ntBASIC17.42■□□□□ 0.38
PTPN9P43378 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC17.42■□□□□ 0.38
PTPN9P43378 AC004877.2-201ENST00000623941 599 ntBASIC17.42■□□□□ 0.38
PTPN9P43378 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.42■□□□□ 0.38
PTPN9P43378 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.42■□□□□ 0.38
PTPN9P43378 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
PTPN9P43378 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
PTPN9P43378 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.42■□□□□ 0.38
PTPN9P43378 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
PTPN9P43378 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.41■□□□□ 0.38
PTPN9P43378 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN9P43378 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN9P43378 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.41■□□□□ 0.38
PTPN9P43378 PMS2P4-201ENST00000412466 1052 ntBASIC17.41■□□□□ 0.38
PTPN9P43378 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.41■□□□□ 0.38
PTPN9P43378 MED15P5-201ENST00000423150 992 ntBASIC17.41■□□□□ 0.38
PTPN9P43378 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.41■□□□□ 0.38
PTPN9P43378 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.41■□□□□ 0.38
PTPN9P43378 RNA5SP416-201ENST00000516838 111 ntBASIC17.41■□□□□ 0.38
PTPN9P43378 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.41■□□□□ 0.38
PTPN9P43378 KRT19P2-202ENST00000557173 1012 ntBASIC17.41■□□□□ 0.38
PTPN9P43378 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.41■□□□□ 0.38
PTPN9P43378 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN9P43378 AL031055.1-201ENST00000606362 631 ntBASIC17.41■□□□□ 0.38
PTPN9P43378 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN9P43378 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN9P43378 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
PTPN9P43378 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
PTPN9P43378 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN9P43378 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.41■□□□□ 0.38
PTPN9P43378 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN9P43378 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN9P43378 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
PTPN9P43378 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN9P43378 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN9P43378 BCAR1-209ENST00000546196 1340 ntBASIC17.41■□□□□ 0.38
PTPN9P43378 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.41■□□□□ 0.38
PTPN9P43378 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN9P43378 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
PTPN9P43378 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.41■□□□□ 0.38
PTPN9P43378 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN9P43378 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN9P43378 GPAA1P2-202ENST00000606848 1787 ntBASIC17.4■□□□□ 0.38
PTPN9P43378 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN9P43378 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN9P43378 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN9P43378 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN9P43378 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.4■□□□□ 0.38
PTPN9P43378 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN9P43378 AC025580.3-201ENST00000617932 1424 ntBASIC17.4■□□□□ 0.38
PTPN9P43378 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN9P43378 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN9P43378 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN9P43378 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN9P43378 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN9P43378 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN9P43378 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
PTPN9P43378 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTPN9P43378 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.4■□□□□ 0.38
PTPN9P43378 KRT18P3-201ENST00000451602 1288 ntBASIC17.4■□□□□ 0.38
PTPN9P43378 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
PTPN9P43378 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.4■□□□□ 0.38
PTPN9P43378 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.4■□□□□ 0.38
PTPN9P43378 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.4■□□□□ 0.38
PTPN9P43378 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.4■□□□□ 0.38
PTPN9P43378 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
PTPN9P43378 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms