Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TNFSF9P41273 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
TNFSF9P41273 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TNFSF9P41273 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC18.11■□□□□ 0.49
TNFSF9P41273 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TNFSF9P41273 TFAMP1-201ENST00000412727 736 ntBASIC18.11■□□□□ 0.49
TNFSF9P41273 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC18.11■□□□□ 0.49
TNFSF9P41273 WDR53-204ENST00000433160 887 ntTSL 5 BASIC18.11■□□□□ 0.49
TNFSF9P41273 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.11■□□□□ 0.49
TNFSF9P41273 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.11■□□□□ 0.49
TNFSF9P41273 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC18.11■□□□□ 0.49
TNFSF9P41273 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.11■□□□□ 0.49
TNFSF9P41273 RARRES2P8-201ENST00000566335 367 ntBASIC18.11■□□□□ 0.49
TNFSF9P41273 AP001160.2-201ENST00000596071 487 ntBASIC18.11■□□□□ 0.49
TNFSF9P41273 AC105339.1-204ENST00000636249 355 ntBASIC18.11■□□□□ 0.49
TNFSF9P41273 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TNFSF9P41273 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TNFSF9P41273 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TNFSF9P41273 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TNFSF9P41273 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TNFSF9P41273 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TNFSF9P41273 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TNFSF9P41273 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
TNFSF9P41273 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TNFSF9P41273 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TNFSF9P41273 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TNFSF9P41273 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TNFSF9P41273 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
TNFSF9P41273 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
TNFSF9P41273 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC18.1■□□□□ 0.49
TNFSF9P41273 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TNFSF9P41273 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TNFSF9P41273 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
TNFSF9P41273 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.1■□□□□ 0.49
TNFSF9P41273 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC18.1■□□□□ 0.49
TNFSF9P41273 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
TNFSF9P41273 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TNFSF9P41273 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC18.1■□□□□ 0.49
TNFSF9P41273 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC18.1■□□□□ 0.49
TNFSF9P41273 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC18.1■□□□□ 0.49
TNFSF9P41273 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC18.1■□□□□ 0.49
TNFSF9P41273 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.1■□□□□ 0.49
TNFSF9P41273 STOM-202ENST00000347359 870 ntTSL 2 BASIC18.1■□□□□ 0.49
TNFSF9P41273 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
TNFSF9P41273 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC18.1■□□□□ 0.49
TNFSF9P41273 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC18.1■□□□□ 0.49
TNFSF9P41273 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.1■□□□□ 0.49
TNFSF9P41273 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TNFSF9P41273 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TNFSF9P41273 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
TNFSF9P41273 TIMM8BP1-201ENST00000452384 211 ntBASIC18.1■□□□□ 0.49
TNFSF9P41273 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC18.1■□□□□ 0.49
TNFSF9P41273 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TNFSF9P41273 AC243562.1-201ENST00000560672 389 ntBASIC18.1■□□□□ 0.49
TNFSF9P41273 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC18.1■□□□□ 0.49
TNFSF9P41273 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.1■□□□□ 0.49
TNFSF9P41273 AC022145.2-201ENST00000598203 171 ntBASIC18.1■□□□□ 0.49
TNFSF9P41273 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.1■□□□□ 0.49
TNFSF9P41273 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.1■□□□□ 0.49
TNFSF9P41273 AC026120.1-201ENST00000611536 926 ntBASIC18.1■□□□□ 0.49
TNFSF9P41273 AL161645.1-201ENST00000622716 1255 ntBASIC18.1■□□□□ 0.49
TNFSF9P41273 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.1■□□□□ 0.49
TNFSF9P41273 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
TNFSF9P41273 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
TNFSF9P41273 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC18.1■□□□□ 0.49
TNFSF9P41273 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
TNFSF9P41273 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TNFSF9P41273 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TNFSF9P41273 HLA-A-202ENST00000376806 1854 ntBASIC18.09■□□□□ 0.49
TNFSF9P41273 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TNFSF9P41273 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
TNFSF9P41273 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TNFSF9P41273 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
TNFSF9P41273 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
TNFSF9P41273 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.09■□□□□ 0.49
TNFSF9P41273 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TNFSF9P41273 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.09■□□□□ 0.49
TNFSF9P41273 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TNFSF9P41273 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TNFSF9P41273 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TNFSF9P41273 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TNFSF9P41273 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TNFSF9P41273 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.09■□□□□ 0.49
TNFSF9P41273 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.09■□□□□ 0.49
TNFSF9P41273 AC004461.1-201ENST00000412461 403 ntBASIC18.09■□□□□ 0.49
TNFSF9P41273 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.09■□□□□ 0.49
TNFSF9P41273 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.09■□□□□ 0.49
TNFSF9P41273 AL513210.1-201ENST00000629608 234 ntBASIC18.09■□□□□ 0.49
TNFSF9P41273 AL139011.1-202ENST00000642063 584 ntBASIC18.09■□□□□ 0.49
TNFSF9P41273 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TNFSF9P41273 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TNFSF9P41273 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TNFSF9P41273 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TNFSF9P41273 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TNFSF9P41273 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TNFSF9P41273 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
TNFSF9P41273 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TNFSF9P41273 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TNFSF9P41273 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
TNFSF9P41273 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms