Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
CIITAP33076 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC18.85■□□□□ 0.61
CIITAP33076 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CIITAP33076 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
CIITAP33076 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.84■□□□□ 0.61
CIITAP33076 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
CIITAP33076 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
CIITAP33076 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.84■□□□□ 0.61
CIITAP33076 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 AC004461.1-201ENST00000412461 403 ntBASIC18.84■□□□□ 0.61
CIITAP33076 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC18.84■□□□□ 0.61
CIITAP33076 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.84■□□□□ 0.61
CIITAP33076 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC18.84■□□□□ 0.61
CIITAP33076 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC18.84■□□□□ 0.61
CIITAP33076 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18.84■□□□□ 0.61
CIITAP33076 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.84■□□□□ 0.61
CIITAP33076 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.84■□□□□ 0.61
CIITAP33076 LINC01225-203ENST00000563550 1244 ntBASIC18.84■□□□□ 0.61
CIITAP33076 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.84■□□□□ 0.61
CIITAP33076 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.84■□□□□ 0.61
CIITAP33076 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.84■□□□□ 0.61
CIITAP33076 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC18.84■□□□□ 0.61
CIITAP33076 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CIITAP33076 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 HLA-A-202ENST00000376806 1854 ntBASIC18.84■□□□□ 0.61
CIITAP33076 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CIITAP33076 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CIITAP33076 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CIITAP33076 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CIITAP33076 AL031731.1-201ENST00000642131 2094 ntBASIC18.83■□□□□ 0.61
CIITAP33076 GGT4P-201ENST00000623672 1708 ntBASIC18.83■□□□□ 0.61
CIITAP33076 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
CIITAP33076 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.61
CIITAP33076 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
CIITAP33076 OR6D1P-202ENST00000641007 5290 ntBASIC18.83■□□□□ 0.61
CIITAP33076 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC18.83■□□□□ 0.6
CIITAP33076 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC18.83■□□□□ 0.6
CIITAP33076 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CIITAP33076 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CIITAP33076 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC18.83■□□□□ 0.6
CIITAP33076 METTL23-205ENST00000588302 925 ntTSL 5 BASIC18.83■□□□□ 0.6
CIITAP33076 RPS15-207ENST00000591032 550 ntTSL 3 BASIC18.83■□□□□ 0.6
CIITAP33076 RPS15-212ENST00000593052 629 ntTSL 2 BASIC18.83■□□□□ 0.6
CIITAP33076 AC079781.4-201ENST00000641908 219 ntBASIC18.83■□□□□ 0.6
CIITAP33076 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CIITAP33076 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
CIITAP33076 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC18.83■□□□□ 0.6
CIITAP33076 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CIITAP33076 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
CIITAP33076 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.83■□□□□ 0.6
CIITAP33076 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CIITAP33076 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
CIITAP33076 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.83■□□□□ 0.6
CIITAP33076 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CIITAP33076 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CIITAP33076 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CIITAP33076 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
CIITAP33076 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.83■□□□□ 0.6
CIITAP33076 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CIITAP33076 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC18.83■□□□□ 0.6
CIITAP33076 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CIITAP33076 AD000864.1-201ENST00000624076 2295 ntBASIC18.83■□□□□ 0.6
CIITAP33076 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
CIITAP33076 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC18.82■□□□□ 0.6
CIITAP33076 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CIITAP33076 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CIITAP33076 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CIITAP33076 AGGF1P2-201ENST00000426656 2106 ntBASIC18.82■□□□□ 0.6
CIITAP33076 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CIITAP33076 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CIITAP33076 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.82■□□□□ 0.6
CIITAP33076 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CIITAP33076 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms