Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
ERCC3P19447 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ERCC3P19447 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC19.41■□□□□ 0.7
ERCC3P19447 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
ERCC3P19447 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC19.41■□□□□ 0.7
ERCC3P19447 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ERCC3P19447 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ERCC3P19447 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ERCC3P19447 IGHV3-62-201ENST00000520057 340 ntBASIC19.41■□□□□ 0.7
ERCC3P19447 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ERCC3P19447 AJ011932.1-201ENST00000621707 465 ntBASIC19.41■□□□□ 0.7
ERCC3P19447 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC19.41■□□□□ 0.7
ERCC3P19447 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ERCC3P19447 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC19.41■□□□□ 0.7
ERCC3P19447 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ERCC3P19447 TUBB3P1-201ENST00000405796 1332 ntBASIC19.41■□□□□ 0.7
ERCC3P19447 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ERCC3P19447 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ERCC3P19447 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ERCC3P19447 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
ERCC3P19447 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ERCC3P19447 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC19.41■□□□□ 0.7
ERCC3P19447 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ERCC3P19447 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ERCC3P19447 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ERCC3P19447 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ERCC3P19447 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ERCC3P19447 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
ERCC3P19447 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.4■□□□□ 0.7
ERCC3P19447 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ERCC3P19447 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ERCC3P19447 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC19.4■□□□□ 0.7
ERCC3P19447 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ERCC3P19447 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ERCC3P19447 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ERCC3P19447 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ERCC3P19447 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ERCC3P19447 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ERCC3P19447 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.4■□□□□ 0.7
ERCC3P19447 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ERCC3P19447 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ERCC3P19447 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC19.4■□□□□ 0.7
ERCC3P19447 AC055876.3-201ENST00000431496 288 ntBASIC19.4■□□□□ 0.7
ERCC3P19447 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC19.4■□□□□ 0.7
ERCC3P19447 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC19.4■□□□□ 0.7
ERCC3P19447 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC19.4■□□□□ 0.7
ERCC3P19447 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC19.4■□□□□ 0.7
ERCC3P19447 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
ERCC3P19447 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
ERCC3P19447 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ERCC3P19447 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ERCC3P19447 AC138649.4-201ENST00000612222 287 ntBASIC19.4■□□□□ 0.7
ERCC3P19447 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ERCC3P19447 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ERCC3P19447 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ERCC3P19447 AL353732.1-201ENST00000569618 1459 ntBASIC19.4■□□□□ 0.7
ERCC3P19447 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ERCC3P19447 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
ERCC3P19447 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ERCC3P19447 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.7
ERCC3P19447 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
ERCC3P19447 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC19.39■□□□□ 0.7
ERCC3P19447 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
ERCC3P19447 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ERCC3P19447 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ERCC3P19447 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
ERCC3P19447 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ERCC3P19447 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC19.39■□□□□ 0.69
ERCC3P19447 AC109635.5-201ENST00000533593 962 ntBASIC19.39■□□□□ 0.69
ERCC3P19447 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC19.39■□□□□ 0.69
ERCC3P19447 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ERCC3P19447 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC19.39■□□□□ 0.69
ERCC3P19447 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ERCC3P19447 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ERCC3P19447 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
ERCC3P19447 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ERCC3P19447 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC19.39■□□□□ 0.69
ERCC3P19447 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ERCC3P19447 UXT-AS1-201ENST00000590504 1525 ntBASIC19.39■□□□□ 0.69
ERCC3P19447 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ERCC3P19447 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ERCC3P19447 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19.39■□□□□ 0.69
ERCC3P19447 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.39■□□□□ 0.69
ERCC3P19447 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ERCC3P19447 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ERCC3P19447 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ERCC3P19447 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ERCC3P19447 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ERCC3P19447 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ERCC3P19447 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ERCC3P19447 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ERCC3P19447 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ERCC3P19447 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ERCC3P19447 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
ERCC3P19447 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
ERCC3P19447 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.38■□□□□ 0.69
ERCC3P19447 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ERCC3P19447 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ERCC3P19447 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ERCC3P19447 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms