Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VPS4BO75351 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VPS4BO75351 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.51■□□□□ 0.23
VPS4BO75351 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.51■□□□□ 0.23
VPS4BO75351 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.51■□□□□ 0.23
VPS4BO75351 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.51■□□□□ 0.23
VPS4BO75351 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.51■□□□□ 0.23
VPS4BO75351 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
VPS4BO75351 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
VPS4BO75351 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 MED15P5-201ENST00000423150 992 ntBASIC16.51■□□□□ 0.23
VPS4BO75351 AL591424.1-201ENST00000442569 1213 ntBASIC16.51■□□□□ 0.23
VPS4BO75351 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.51■□□□□ 0.23
VPS4BO75351 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.51■□□□□ 0.23
VPS4BO75351 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.51■□□□□ 0.23
VPS4BO75351 AC027796.2-201ENST00000575326 344 ntBASIC16.51■□□□□ 0.23
VPS4BO75351 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 FAM197Y3-203ENST00000618346 717 ntBASIC16.51■□□□□ 0.23
VPS4BO75351 AC055717.3-201ENST00000622967 595 ntBASIC16.51■□□□□ 0.23
VPS4BO75351 AL391005.1-201ENST00000623953 2435 ntBASIC16.51■□□□□ 0.23
VPS4BO75351 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
VPS4BO75351 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 AC104109.2-201ENST00000602919 1418 ntBASIC16.51■□□□□ 0.23
VPS4BO75351 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS4BO75351 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.51■□□□□ 0.23
VPS4BO75351 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS4BO75351 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS4BO75351 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 AL391256.1-201ENST00000443260 1855 ntBASIC16.5■□□□□ 0.23
VPS4BO75351 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.5■□□□□ 0.23
VPS4BO75351 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS4BO75351 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
VPS4BO75351 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS4BO75351 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS4BO75351 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS4BO75351 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.5■□□□□ 0.23
VPS4BO75351 RBM17P3-201ENST00000417687 1192 ntBASIC16.5■□□□□ 0.23
VPS4BO75351 ACTG1P4-201ENST00000425123 1122 ntBASIC16.5■□□□□ 0.23
VPS4BO75351 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 AC010327.4-202ENST00000591484 748 ntBASIC16.5■□□□□ 0.23
VPS4BO75351 MTDHP3-201ENST00000594186 672 ntBASIC16.5■□□□□ 0.23
VPS4BO75351 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS4BO75351 AL355877.3-201ENST00000622820 899 ntBASIC16.5■□□□□ 0.23
VPS4BO75351 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.5■□□□□ 0.23
VPS4BO75351 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS4BO75351 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS4BO75351 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS4BO75351 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 AL021920.2-201ENST00000624828 1351 ntBASIC16.5■□□□□ 0.23
VPS4BO75351 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS4BO75351 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS4BO75351 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS4BO75351 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS4BO75351 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS4BO75351 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS4BO75351 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS4BO75351 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS4BO75351 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms