Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC23.19■■□□□ 1.3
NPHP4O75161 RPL28-207ENST00000558815 616 ntTSL 2 BASIC23.19■■□□□ 1.3
NPHP4O75161 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC23.19■■□□□ 1.3
NPHP4O75161 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP4O75161 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP4O75161 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP4O75161 AL589702.1-201ENST00000641229 1509 ntBASIC23.19■■□□□ 1.3
NPHP4O75161 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP4O75161 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP4O75161 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP4O75161 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP4O75161 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP4O75161 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP4O75161 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP4O75161 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP4O75161 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP4O75161 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP4O75161 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC23.18■■□□□ 1.3
NPHP4O75161 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP4O75161 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP4O75161 AL355312.1-201ENST00000407115 2176 ntBASIC23.18■■□□□ 1.3
NPHP4O75161 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP4O75161 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
NPHP4O75161 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP4O75161 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP4O75161 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP4O75161 YBX1P6-201ENST00000442962 1002 ntBASIC23.18■■□□□ 1.3
NPHP4O75161 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
NPHP4O75161 AC068587.3-201ENST00000526613 355 ntBASIC23.18■■□□□ 1.3
NPHP4O75161 FOS-206ENST00000555347 1280 ntTSL 2 BASIC23.18■■□□□ 1.3
NPHP4O75161 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC23.18■■□□□ 1.3
NPHP4O75161 AC020765.3-201ENST00000613051 740 ntBASIC23.18■■□□□ 1.3
NPHP4O75161 AL158212.4-201ENST00000624062 1286 ntBASIC23.18■■□□□ 1.3
NPHP4O75161 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC23.18■■□□□ 1.3
NPHP4O75161 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP4O75161 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC23.18■■□□□ 1.3
NPHP4O75161 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP4O75161 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP4O75161 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC23.18■■□□□ 1.3
NPHP4O75161 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP4O75161 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP4O75161 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
NPHP4O75161 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
NPHP4O75161 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC23.18■■□□□ 1.3
NPHP4O75161 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP4O75161 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC23.17■■□□□ 1.3
NPHP4O75161 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
NPHP4O75161 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP4O75161 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP4O75161 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP4O75161 APOA1-205ENST00000375329 927 ntTSL 2 BASIC23.17■■□□□ 1.3
NPHP4O75161 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP4O75161 MIR663B-201ENST00000408361 115 ntBASIC23.17■■□□□ 1.3
NPHP4O75161 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP4O75161 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
NPHP4O75161 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP4O75161 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP4O75161 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP4O75161 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP4O75161 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP4O75161 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP4O75161 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP4O75161 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
NPHP4O75161 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP4O75161 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP4O75161 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC23.17■■□□□ 1.3
NPHP4O75161 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP4O75161 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP4O75161 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC23.17■■□□□ 1.3
NPHP4O75161 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP4O75161 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP4O75161 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
NPHP4O75161 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC23.16■■□□□ 1.3
NPHP4O75161 HIST3H2BA-201ENST00000436555 524 ntBASIC23.16■■□□□ 1.3
NPHP4O75161 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP4O75161 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC23.16■■□□□ 1.3
NPHP4O75161 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC23.16■■□□□ 1.3
NPHP4O75161 AP001889.1-201ENST00000525414 633 ntBASIC23.16■■□□□ 1.3
NPHP4O75161 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC23.16■■□□□ 1.3
NPHP4O75161 AC036164.1-201ENST00000570544 333 ntBASIC23.16■■□□□ 1.3
NPHP4O75161 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC23.16■■□□□ 1.3
NPHP4O75161 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC23.16■■□□□ 1.3
NPHP4O75161 AC010328.2-201ENST00000597698 1111 ntBASIC23.16■■□□□ 1.3
NPHP4O75161 AC013467.2-201ENST00000605472 835 ntBASIC23.16■■□□□ 1.3
NPHP4O75161 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC23.16■■□□□ 1.3
NPHP4O75161 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP4O75161 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
NPHP4O75161 HNRNPA1P48-201ENST00000562726 1377 ntBASIC23.16■■□□□ 1.3
NPHP4O75161 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
NPHP4O75161 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC23.16■■□□□ 1.3
NPHP4O75161 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP4O75161 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP4O75161 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP4O75161 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP4O75161 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP4O75161 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC23.16■■□□□ 1.3
NPHP4O75161 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC23.16■■□□□ 1.3
NPHP4O75161 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP4O75161 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP4O75161 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms