Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBFD1O14562 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBFD1O14562 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
UBFD1O14562 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBFD1O14562 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
UBFD1O14562 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.31■□□□□ 0.2
UBFD1O14562 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBFD1O14562 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
UBFD1O14562 PTCHD3P3-201ENST00000403073 906 ntBASIC16.31■□□□□ 0.2
UBFD1O14562 FGFR3P6-201ENST00000457012 610 ntBASIC16.31■□□□□ 0.2
UBFD1O14562 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBFD1O14562 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.31■□□□□ 0.2
UBFD1O14562 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
UBFD1O14562 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.31■□□□□ 0.2
UBFD1O14562 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.31■□□□□ 0.2
UBFD1O14562 AC004706.3-202ENST00000621574 984 ntBASIC16.31■□□□□ 0.2
UBFD1O14562 AL355877.3-201ENST00000622820 899 ntBASIC16.31■□□□□ 0.2
UBFD1O14562 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBFD1O14562 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
UBFD1O14562 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBFD1O14562 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.31■□□□□ 0.2
UBFD1O14562 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
UBFD1O14562 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBFD1O14562 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBFD1O14562 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBFD1O14562 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.31■□□□□ 0.2
UBFD1O14562 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBFD1O14562 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.31■□□□□ 0.2
UBFD1O14562 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
UBFD1O14562 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
UBFD1O14562 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
UBFD1O14562 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBFD1O14562 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBFD1O14562 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.31■□□□□ 0.2
UBFD1O14562 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.31■□□□□ 0.2
UBFD1O14562 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
UBFD1O14562 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.3■□□□□ 0.2
UBFD1O14562 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
UBFD1O14562 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
UBFD1O14562 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
UBFD1O14562 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.3■□□□□ 0.2
UBFD1O14562 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
UBFD1O14562 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
UBFD1O14562 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
UBFD1O14562 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
UBFD1O14562 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
UBFD1O14562 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
UBFD1O14562 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
UBFD1O14562 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
UBFD1O14562 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
UBFD1O14562 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
UBFD1O14562 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
UBFD1O14562 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
UBFD1O14562 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.3■□□□□ 0.2
UBFD1O14562 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.3■□□□□ 0.2
UBFD1O14562 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.3■□□□□ 0.2
UBFD1O14562 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.3■□□□□ 0.2
UBFD1O14562 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
UBFD1O14562 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.3■□□□□ 0.2
UBFD1O14562 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.3■□□□□ 0.2
UBFD1O14562 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.3■□□□□ 0.2
UBFD1O14562 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.3■□□□□ 0.2
UBFD1O14562 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
UBFD1O14562 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.3■□□□□ 0.2
UBFD1O14562 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
UBFD1O14562 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.3■□□□□ 0.2
UBFD1O14562 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
UBFD1O14562 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
UBFD1O14562 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
UBFD1O14562 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.3■□□□□ 0.2
UBFD1O14562 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
UBFD1O14562 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
UBFD1O14562 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
UBFD1O14562 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
UBFD1O14562 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
UBFD1O14562 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
UBFD1O14562 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
UBFD1O14562 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
UBFD1O14562 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
UBFD1O14562 KRT8P39-201ENST00000396270 1433 ntBASIC16.29■□□□□ 0.2
UBFD1O14562 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
UBFD1O14562 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
UBFD1O14562 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
UBFD1O14562 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
UBFD1O14562 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
UBFD1O14562 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.29■□□□□ 0.2
UBFD1O14562 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
UBFD1O14562 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
UBFD1O14562 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
UBFD1O14562 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
UBFD1O14562 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.29■□□□□ 0.2
UBFD1O14562 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
UBFD1O14562 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.29■□□□□ 0.2
UBFD1O14562 SLC25A6P2-201ENST00000497974 877 ntBASIC16.29■□□□□ 0.2
UBFD1O14562 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
UBFD1O14562 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.29■□□□□ 0.2
UBFD1O14562 MTDHP4-201ENST00000600287 670 ntBASIC16.29■□□□□ 0.2
UBFD1O14562 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.29■□□□□ 0.2
UBFD1O14562 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
UBFD1O14562 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms