Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC008267.1-201ENST00000474858 1069 ntBASIC12.82□□□□□ -0.36
COL6A5A8TX70 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC12.82□□□□□ -0.36
COL6A5A8TX70 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC12.82□□□□□ -0.36
COL6A5A8TX70 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC12.82□□□□□ -0.36
COL6A5A8TX70 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC12.82□□□□□ -0.36
COL6A5A8TX70 AL136301.1-201ENST00000615830 422 ntBASIC12.82□□□□□ -0.36
COL6A5A8TX70 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC12.82□□□□□ -0.36
COL6A5A8TX70 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL6A5A8TX70 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
COL6A5A8TX70 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL6A5A8TX70 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC12.81□□□□□ -0.36
COL6A5A8TX70 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL6A5A8TX70 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL6A5A8TX70 MGST3-203ENST00000367885 680 ntTSL 2 BASIC12.81□□□□□ -0.36
COL6A5A8TX70 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC12.81□□□□□ -0.36
COL6A5A8TX70 ENPP7P5-201ENST00000541031 1031 ntBASIC12.81□□□□□ -0.36
COL6A5A8TX70 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL6A5A8TX70 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC12.81□□□□□ -0.36
COL6A5A8TX70 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL6A5A8TX70 AC244669.2-201ENST00000612320 853 ntBASIC12.81□□□□□ -0.36
COL6A5A8TX70 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC12.81□□□□□ -0.36
COL6A5A8TX70 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL6A5A8TX70 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC12.81□□□□□ -0.36
COL6A5A8TX70 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC12.81□□□□□ -0.36
COL6A5A8TX70 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC12.81□□□□□ -0.36
COL6A5A8TX70 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL6A5A8TX70 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL6A5A8TX70 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC12.81□□□□□ -0.36
COL6A5A8TX70 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL6A5A8TX70 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL6A5A8TX70 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL6A5A8TX70 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL6A5A8TX70 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL6A5A8TX70 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC12.81□□□□□ -0.36
COL6A5A8TX70 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
COL6A5A8TX70 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL6A5A8TX70 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
COL6A5A8TX70 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL6A5A8TX70 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL6A5A8TX70 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL6A5A8TX70 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL6A5A8TX70 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL6A5A8TX70 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC12.8□□□□□ -0.36
COL6A5A8TX70 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL6A5A8TX70 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
COL6A5A8TX70 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL6A5A8TX70 AC016694.1-201ENST00000434179 700 ntBASIC12.8□□□□□ -0.36
COL6A5A8TX70 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC12.8□□□□□ -0.36
COL6A5A8TX70 FTLP10-202ENST00000505798 471 ntBASIC12.8□□□□□ -0.36
COL6A5A8TX70 AC104596.2-201ENST00000512793 793 ntBASIC12.8□□□□□ -0.36
COL6A5A8TX70 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC12.8□□□□□ -0.36
COL6A5A8TX70 MIR4492-201ENST00000581627 80 ntBASIC12.8□□□□□ -0.36
COL6A5A8TX70 RN7SL555P-201ENST00000584742 339 ntBASIC12.8□□□□□ -0.36
COL6A5A8TX70 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
COL6A5A8TX70 AC021097.1-201ENST00000607902 574 ntBASIC12.8□□□□□ -0.36
COL6A5A8TX70 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
COL6A5A8TX70 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC12.8□□□□□ -0.36
COL6A5A8TX70 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL6A5A8TX70 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL6A5A8TX70 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL6A5A8TX70 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL6A5A8TX70 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL6A5A8TX70 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL6A5A8TX70 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL6A5A8TX70 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
COL6A5A8TX70 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL6A5A8TX70 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL6A5A8TX70 CDK2AP2P3-201ENST00000422476 372 ntBASIC12.8□□□□□ -0.36
COL6A5A8TX70 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC12.8□□□□□ -0.36
COL6A5A8TX70 PFN2-215ENST00000497148 743 ntTSL 4 BASIC12.8□□□□□ -0.36
COL6A5A8TX70 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC12.8□□□□□ -0.36
COL6A5A8TX70 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC12.8□□□□□ -0.36
COL6A5A8TX70 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC12.8□□□□□ -0.36
COL6A5A8TX70 AL353726.2-201ENST00000623259 884 ntBASIC12.8□□□□□ -0.36
COL6A5A8TX70 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL6A5A8TX70 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC12.8□□□□□ -0.36
COL6A5A8TX70 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL6A5A8TX70 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC12.8□□□□□ -0.36
COL6A5A8TX70 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL6A5A8TX70 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL6A5A8TX70 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL6A5A8TX70 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL6A5A8TX70 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 ATP6V0CP2-201ENST00000469409 207 ntBASIC12.79□□□□□ -0.36
COL6A5A8TX70 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
COL6A5A8TX70 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL6A5A8TX70 AC018635.2-201ENST00000608625 364 ntBASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms