Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 SART3-203ENST00000546611 1184 ntBASIC13.63□□□□□ -0.23
FOXA2Q9Y261 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 AC064862.7-201ENST00000604520 867 ntBASIC13.63□□□□□ -0.23
FOXA2Q9Y261 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 HNRNPRP1-201ENST00000453465 1695 ntBASIC13.63□□□□□ -0.23
FOXA2Q9Y261 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 AC006538.1-201ENST00000567905 1585 ntBASIC13.62□□□□□ -0.23
FOXA2Q9Y261 GCK-209ENST00000616242 2260 ntTSL 5 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 F11R-206ENST00000621309 4770 ntTSL 5 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 LINC00982-205ENST00000420957 435 ntBASIC13.62□□□□□ -0.23
FOXA2Q9Y261 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 AF186996.4-201ENST00000467186 377 ntBASIC13.62□□□□□ -0.23
FOXA2Q9Y261 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 AC004817.3-201ENST00000602957 2129 ntBASIC13.62□□□□□ -0.23
FOXA2Q9Y261 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 CES3-203ENST00000543856 3178 ntTSL 2 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC13.62□□□□□ -0.23
FOXA2Q9Y261 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA2Q9Y261 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms