Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 KRT16P4-201ENST00000453883 522 ntBASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 AC138894.3-201ENST00000603787 634 ntBASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 AL591684.3-201ENST00000605187 298 ntBASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 AP000867.4-201ENST00000641616 219 ntBASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 AL365203.3-201ENST00000609742 2057 ntBASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC39Q9UFE4 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 AL135999.2-201ENST00000622438 1686 ntBASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 SOD2-201ENST00000337404 991 ntTSL 2 BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 ABCD1P5-201ENST00000445663 754 ntBASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
CCDC39Q9UFE4 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC19.52■□□□□ 0.71
CCDC39Q9UFE4 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC19.52■□□□□ 0.71
CCDC39Q9UFE4 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC19.52■□□□□ 0.71
CCDC39Q9UFE4 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 AL136379.1-201ENST00000623471 2642 ntBASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 SLC25A1P3-201ENST00000395415 828 ntBASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 AL020989.1-201ENST00000422979 469 ntBASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 HCG4P8-203ENST00000443049 980 ntBASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 MIR3652-201ENST00000579335 131 ntBASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms