Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 BCRP1-201ENST00000444246 691 ntBASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 AC109322.1-201ENST00000524499 1264 ntBASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 BSG-214ENST00000614867 960 ntTSL 3 BASIC20.34■□□□□ 0.85
RPAP1Q9BWH6 AC018695.7-201ENST00000624587 2492 ntBASIC20.33■□□□□ 0.85
RPAP1Q9BWH6 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC20.33■□□□□ 0.85
RPAP1Q9BWH6 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC20.33■□□□□ 0.85
RPAP1Q9BWH6 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
RPAP1Q9BWH6 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 DAD1-205ENST00000543337 501 ntTSL 3 BASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 AC093520.2-201ENST00000561830 333 ntBASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 AC092364.2-202ENST00000597012 1073 ntBASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 AL096865.1-201ENST00000606796 927 ntBASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 AC093512.1-201ENST00000617969 520 ntBASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC20.33■□□□□ 0.84
RPAP1Q9BWH6 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 RN7SL589P-201ENST00000481268 310 ntBASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 NMU-203ENST00000507338 658 ntTSL 3 BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 LINC00628-201ENST00000628516 1289 ntBASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC20.32■□□□□ 0.84
RPAP1Q9BWH6 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 CALY-203ENST00000368558 825 ntTSL 5 BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
RPAP1Q9BWH6 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms