Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDX2Q99626 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDX2Q99626 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC17.29■□□□□ 0.36
CDX2Q99626 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDX2Q99626 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDX2Q99626 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC17.29■□□□□ 0.36
CDX2Q99626 AC092978.1-202ENST00000637590 1327 ntBASIC17.29■□□□□ 0.36
CDX2Q99626 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDX2Q99626 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDX2Q99626 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
CDX2Q99626 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDX2Q99626 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
CDX2Q99626 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC17.29■□□□□ 0.36
CDX2Q99626 FTH1P14-201ENST00000482930 551 ntBASIC17.29■□□□□ 0.36
CDX2Q99626 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC17.29■□□□□ 0.36
CDX2Q99626 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CDX2Q99626 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDX2Q99626 LINC01451-201ENST00000623792 534 ntBASIC17.29■□□□□ 0.36
CDX2Q99626 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CDX2Q99626 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDX2Q99626 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CDX2Q99626 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDX2Q99626 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CDX2Q99626 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDX2Q99626 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
CDX2Q99626 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.29■□□□□ 0.36
CDX2Q99626 KRT8P19-201ENST00000551916 1455 ntBASIC17.29■□□□□ 0.36
CDX2Q99626 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC17.29■□□□□ 0.36
CDX2Q99626 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDX2Q99626 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDX2Q99626 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CDX2Q99626 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.28■□□□□ 0.36
CDX2Q99626 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX2Q99626 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX2Q99626 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CDX2Q99626 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC17.28■□□□□ 0.36
CDX2Q99626 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX2Q99626 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC17.28■□□□□ 0.36
CDX2Q99626 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CDX2Q99626 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX2Q99626 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CDX2Q99626 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CDX2Q99626 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CDX2Q99626 CROCCP3-202ENST00000420820 1947 ntBASIC17.28■□□□□ 0.36
CDX2Q99626 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CDX2Q99626 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX2Q99626 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CDX2Q99626 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX2Q99626 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
CDX2Q99626 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX2Q99626 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CDX2Q99626 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX2Q99626 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CDX2Q99626 FNTAP2-201ENST00000430308 634 ntBASIC17.28■□□□□ 0.36
CDX2Q99626 OLR1-203ENST00000432556 950 ntTSL 2 BASIC17.28■□□□□ 0.36
CDX2Q99626 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
CDX2Q99626 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC17.28■□□□□ 0.36
CDX2Q99626 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17.28■□□□□ 0.36
CDX2Q99626 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC17.28■□□□□ 0.36
CDX2Q99626 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.28■□□□□ 0.36
CDX2Q99626 AC138028.6-201ENST00000616106 1482 ntBASIC17.28■□□□□ 0.36
CDX2Q99626 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX2Q99626 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CDX2Q99626 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.28■□□□□ 0.36
CDX2Q99626 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX2Q99626 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX2Q99626 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX2Q99626 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
CDX2Q99626 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC17.28■□□□□ 0.36
CDX2Q99626 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.36
CDX2Q99626 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDX2Q99626 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.27■□□□□ 0.36
CDX2Q99626 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
CDX2Q99626 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
CDX2Q99626 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.27■□□□□ 0.36
CDX2Q99626 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.27■□□□□ 0.36
CDX2Q99626 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CDX2Q99626 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDX2Q99626 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDX2Q99626 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDX2Q99626 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.27■□□□□ 0.36
CDX2Q99626 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDX2Q99626 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.27■□□□□ 0.36
CDX2Q99626 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDX2Q99626 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CDX2Q99626 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDX2Q99626 TPO-206ENST00000382269 1155 ntTSL 5 BASIC17.27■□□□□ 0.36
CDX2Q99626 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
CDX2Q99626 RN7SL769P-201ENST00000469386 295 ntBASIC17.27■□□□□ 0.36
CDX2Q99626 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC17.27■□□□□ 0.36
CDX2Q99626 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC17.27■□□□□ 0.36
CDX2Q99626 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
CDX2Q99626 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDX2Q99626 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC17.27■□□□□ 0.36
CDX2Q99626 PRKN-211ENST00000615065 261 ntTSL 5 BASIC17.27■□□□□ 0.36
CDX2Q99626 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC17.27■□□□□ 0.36
CDX2Q99626 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDX2Q99626 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.27■□□□□ 0.36
CDX2Q99626 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDX2Q99626 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms