Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 RN7SL828P-201ENST00000607615 303 ntBASIC16.38■□□□□ 0.21
VPS13AQ96RL7 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS13AQ96RL7 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 FO681548.1-201ENST00000455617 1132 ntBASIC16.37■□□□□ 0.21
VPS13AQ96RL7 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 RPL13AP20-201ENST00000459725 609 ntBASIC16.37■□□□□ 0.21
VPS13AQ96RL7 AC026740.1-201ENST00000607068 791 ntBASIC16.37■□□□□ 0.21
VPS13AQ96RL7 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC16.37■□□□□ 0.21
VPS13AQ96RL7 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC16.36■□□□□ 0.21
VPS13AQ96RL7 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 FLJ13224-201ENST00000313737 1514 ntBASIC16.36■□□□□ 0.21
VPS13AQ96RL7 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 AC123567.1-201ENST00000548294 1261 ntBASIC16.36■□□□□ 0.21
VPS13AQ96RL7 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.36■□□□□ 0.21
VPS13AQ96RL7 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.36■□□□□ 0.21
VPS13AQ96RL7 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
VPS13AQ96RL7 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 SLC25A47P1-201ENST00000531577 414 ntBASIC16.35■□□□□ 0.21
VPS13AQ96RL7 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.35■□□□□ 0.21
VPS13AQ96RL7 MSTO2P-201ENST00000314835 1709 ntBASIC16.35■□□□□ 0.21
VPS13AQ96RL7 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms