Protein–RNA interactions for Protein: Q96LT7

C9orf72, Guanine nucleotide exchange C9orf72, humanhuman

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf72Q96LT7 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
C9orf72Q96LT7 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 BNIP3P18-201ENST00000593976 575 ntBASIC17.37■□□□□ 0.37
C9orf72Q96LT7 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 AC104692.2-201ENST00000603054 253 ntBASIC17.37■□□□□ 0.37
C9orf72Q96LT7 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.37■□□□□ 0.37
C9orf72Q96LT7 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.37■□□□□ 0.37
C9orf72Q96LT7 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 AC079781.3-201ENST00000449110 356 ntBASIC17.36■□□□□ 0.37
C9orf72Q96LT7 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 AL160237.2-201ENST00000556165 472 ntBASIC17.36■□□□□ 0.37
C9orf72Q96LT7 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 AD001527.2-201ENST00000622994 785 ntBASIC17.36■□□□□ 0.37
C9orf72Q96LT7 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 MYB-242ENST00000618728 3545 ntTSL 5 BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.36■□□□□ 0.37
C9orf72Q96LT7 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
C9orf72Q96LT7 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
C9orf72Q96LT7 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
C9orf72Q96LT7 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.35■□□□□ 0.37
C9orf72Q96LT7 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
C9orf72Q96LT7 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
C9orf72Q96LT7 LINC00554-201ENST00000564841 3011 ntBASIC17.35■□□□□ 0.37
C9orf72Q96LT7 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
C9orf72Q96LT7 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
C9orf72Q96LT7 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
C9orf72Q96LT7 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
C9orf72Q96LT7 AC005052.1-201ENST00000625181 2492 ntBASIC17.35■□□□□ 0.37
C9orf72Q96LT7 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
C9orf72Q96LT7 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.35■□□□□ 0.37
C9orf72Q96LT7 AC096582.2-201ENST00000510860 516 ntBASIC17.35■□□□□ 0.37
C9orf72Q96LT7 AP002490.2-201ENST00000524791 560 ntBASIC17.35■□□□□ 0.37
C9orf72Q96LT7 AC073592.5-201ENST00000624854 528 ntBASIC17.35■□□□□ 0.37
C9orf72Q96LT7 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.35■□□□□ 0.37
C9orf72Q96LT7 TUBB8P12-201ENST00000308911 1335 ntBASIC17.35■□□□□ 0.37
C9orf72Q96LT7 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
C9orf72Q96LT7 TUBB7P-202ENST00000428444 1305 ntBASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms