Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 TERC-201ENST00000602385 541 ntBASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 AL353135.1-201ENST00000606729 504 ntBASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 AC091076.1-201ENST00000610741 619 ntBASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 NCF1C-201ENST00000438382 1427 ntBASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC54Q8NEL0 PCDHB17P-201ENST00000539533 2393 ntBASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 AC103702.1-201ENST00000548801 2630 ntBASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 BET1L-206ENST00000486280 665 ntTSL 3 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 FICD-205ENST00000552758 603 ntTSL 2 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 ARL16-209ENST00000573715 763 ntTSL 3 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 ARL16-211ENST00000576135 694 ntTSL 3 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 AC099336.1-202ENST00000602961 463 ntBASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 NPAP1P7-201ENST00000613027 823 ntBASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 AC092850.2-201ENST00000623821 2697 ntBASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
CCDC54Q8NEL0 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC54Q8NEL0 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
CCDC54Q8NEL0 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC14.71□□□□□ -0.06
CCDC54Q8NEL0 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC54Q8NEL0 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
CCDC54Q8NEL0 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC54Q8NEL0 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.71□□□□□ -0.06
CCDC54Q8NEL0 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC54Q8NEL0 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.71□□□□□ -0.06
CCDC54Q8NEL0 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC54Q8NEL0 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC14.71□□□□□ -0.06
CCDC54Q8NEL0 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.06
CCDC54Q8NEL0 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC54Q8NEL0 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC54Q8NEL0 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC54Q8NEL0 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC54Q8NEL0 CYP2T1P-202ENST00000641596 2535 ntBASIC14.7□□□□□ -0.06
CCDC54Q8NEL0 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms