Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 COX5BP2-201ENST00000392354 334 ntBASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 DUSP5P1-201ENST00000441325 1139 ntBASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 MIR3180-1-201ENST00000580374 94 ntBASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 MIR3180-3-201ENST00000584616 94 ntBASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 STX3-203ENST00000529177 1571 ntTSL 2 BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 FLJ16779-201ENST00000612722 7638 ntBASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
DEPDC4Q8N2C3 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 PNN-202ENST00000553331 656 ntTSL 3 BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 TPSP2-201ENST00000561760 610 ntBASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 AC111152.3-201ENST00000569699 673 ntBASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 TBC1D3P5-201ENST00000579401 1545 ntBASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
DEPDC4Q8N2C3 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
DEPDC4Q8N2C3 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms