Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC20.76■□□□□ 0.91
SYNE4Q8N205 PIN1P1-201ENST00000412108 996 ntBASIC20.76■□□□□ 0.91
SYNE4Q8N205 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SYNE4Q8N205 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC20.76■□□□□ 0.91
SYNE4Q8N205 COQ9-214ENST00000567933 882 ntTSL 3 BASIC20.76■□□□□ 0.91
SYNE4Q8N205 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC20.76■□□□□ 0.91
SYNE4Q8N205 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC20.76■□□□□ 0.91
SYNE4Q8N205 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SYNE4Q8N205 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SYNE4Q8N205 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SYNE4Q8N205 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SYNE4Q8N205 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC20.76■□□□□ 0.91
SYNE4Q8N205 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SYNE4Q8N205 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SYNE4Q8N205 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SYNE4Q8N205 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
SYNE4Q8N205 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
SYNE4Q8N205 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE4Q8N205 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE4Q8N205 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE4Q8N205 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC20.75■□□□□ 0.91
SYNE4Q8N205 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE4Q8N205 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE4Q8N205 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE4Q8N205 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE4Q8N205 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC20.75■□□□□ 0.91
SYNE4Q8N205 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE4Q8N205 SATB1-217ENST00000493952 626 ntTSL 3 BASIC20.75■□□□□ 0.91
SYNE4Q8N205 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC20.75■□□□□ 0.91
SYNE4Q8N205 PRYP6-201ENST00000514804 343 ntBASIC20.75■□□□□ 0.91
SYNE4Q8N205 NOP2-220ENST00000545915 630 ntTSL 2 BASIC20.75■□□□□ 0.91
SYNE4Q8N205 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC20.75■□□□□ 0.91
SYNE4Q8N205 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SYNE4Q8N205 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC20.75■□□□□ 0.91
SYNE4Q8N205 AL359881.2-201ENST00000602973 570 ntBASIC20.75■□□□□ 0.91
SYNE4Q8N205 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SYNE4Q8N205 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
SYNE4Q8N205 AL645728.1-201ENST00000366221 2101 ntBASIC20.75■□□□□ 0.91
SYNE4Q8N205 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE4Q8N205 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE4Q8N205 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC20.75■□□□□ 0.91
SYNE4Q8N205 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE4Q8N205 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE4Q8N205 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC20.75■□□□□ 0.91
SYNE4Q8N205 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE4Q8N205 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
SYNE4Q8N205 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE4Q8N205 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE4Q8N205 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.75■□□□□ 0.91
SYNE4Q8N205 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SYNE4Q8N205 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC20.74■□□□□ 0.91
SYNE4Q8N205 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE4Q8N205 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE4Q8N205 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
SYNE4Q8N205 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC20.74■□□□□ 0.91
SYNE4Q8N205 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
SYNE4Q8N205 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE4Q8N205 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE4Q8N205 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE4Q8N205 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE4Q8N205 AC060834.1-201ENST00000443027 2032 ntBASIC20.74■□□□□ 0.91
SYNE4Q8N205 TMPRSS11CP-201ENST00000453277 683 ntBASIC20.74■□□□□ 0.91
SYNE4Q8N205 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC20.74■□□□□ 0.91
SYNE4Q8N205 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC20.74■□□□□ 0.91
SYNE4Q8N205 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC20.74■□□□□ 0.91
SYNE4Q8N205 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC20.74■□□□□ 0.91
SYNE4Q8N205 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC20.74■□□□□ 0.91
SYNE4Q8N205 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE4Q8N205 SIGLEC29P-201ENST00000599873 1114 ntBASIC20.74■□□□□ 0.91
SYNE4Q8N205 AC013467.2-201ENST00000605472 835 ntBASIC20.74■□□□□ 0.91
SYNE4Q8N205 AC073592.8-201ENST00000624126 511 ntBASIC20.74■□□□□ 0.91
SYNE4Q8N205 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE4Q8N205 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE4Q8N205 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC20.74■□□□□ 0.91
SYNE4Q8N205 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.74■□□□□ 0.91
SYNE4Q8N205 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC20.74■□□□□ 0.91
SYNE4Q8N205 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
SYNE4Q8N205 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SYNE4Q8N205 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
SYNE4Q8N205 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE4Q8N205 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SYNE4Q8N205 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC20.73■□□□□ 0.91
SYNE4Q8N205 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.73■□□□□ 0.91
SYNE4Q8N205 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE4Q8N205 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SYNE4Q8N205 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC20.73■□□□□ 0.91
SYNE4Q8N205 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE4Q8N205 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE4Q8N205 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC20.73■□□□□ 0.91
SYNE4Q8N205 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SYNE4Q8N205 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC20.73■□□□□ 0.91
SYNE4Q8N205 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
SYNE4Q8N205 BANF1P1-201ENST00000553684 263 ntBASIC20.73■□□□□ 0.91
SYNE4Q8N205 SRP9-204ENST00000619790 377 ntTSL 2 BASIC20.73■□□□□ 0.91
SYNE4Q8N205 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SYNE4Q8N205 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE4Q8N205 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
SYNE4Q8N205 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE4Q8N205 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC20.73■□□□□ 0.91
SYNE4Q8N205 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms