Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 SLC25A1P3-201ENST00000395415 828 ntBASIC15.61■□□□□ 0.09
BEST3Q8N1M1 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
BEST3Q8N1M1 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 AC002056.1-201ENST00000395613 760 ntBASIC15.6■□□□□ 0.09
BEST3Q8N1M1 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 AP000344.2-201ENST00000512987 629 ntBASIC15.6■□□□□ 0.09
BEST3Q8N1M1 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms