Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 PCDHA14-201ENST00000506751 2298 ntBASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM3Q53GG5 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
PDLIM3Q53GG5 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
PDLIM3Q53GG5 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC14.02□□□□□ -0.16
PDLIM3Q53GG5 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC14.02□□□□□ -0.16
PDLIM3Q53GG5 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC14.02□□□□□ -0.16
PDLIM3Q53GG5 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC14.02□□□□□ -0.16
PDLIM3Q53GG5 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM3Q53GG5 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC14.02□□□□□ -0.16
PDLIM3Q53GG5 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM3Q53GG5 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM3Q53GG5 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC14.02□□□□□ -0.16
PDLIM3Q53GG5 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
PDLIM3Q53GG5 AC093525.9-201ENST00000624961 1746 ntBASIC14.02□□□□□ -0.16
PDLIM3Q53GG5 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM3Q53GG5 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC14.02□□□□□ -0.16
PDLIM3Q53GG5 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC14.02□□□□□ -0.16
PDLIM3Q53GG5 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM3Q53GG5 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM3Q53GG5 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 YBX2P1-201ENST00000394192 760 ntBASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 NUS1P2-201ENST00000417358 873 ntBASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 LHX6-205ENST00000464484 666 ntTSL 2 BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 AC124947.2-201ENST00000547118 1133 ntBASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 RNF126P1-202ENST00000569893 925 ntBASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 MIR7706-201ENST00000613747 67 ntBASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 TSPY26P-202ENST00000565928 3884 ntBASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM3Q53GG5 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 PC-208ENST00000529047 1607 ntTSL 3 BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 IGHV3-47-201ENST00000425060 335 ntBASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 AC068472.1-201ENST00000474589 881 ntBASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms