Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 BX664615.1-201ENST00000443558 458 ntBASIC15.11■□□□□ 0.01
CCDC58Q4VC31 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 AL353801.3-201ENST00000609898 542 ntBASIC15.11■□□□□ 0.01
CCDC58Q4VC31 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.11■□□□□ 0.01
CCDC58Q4VC31 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 HOMER2P1-201ENST00000455653 964 ntBASIC15.1■□□□□ 0.01
CCDC58Q4VC31 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 STK19B-204ENST00000512515 211 ntBASIC15.1■□□□□ 0.01
CCDC58Q4VC31 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 AL138831.2-201ENST00000606564 490 ntBASIC15.1■□□□□ 0.01
CCDC58Q4VC31 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.1■□□□□ 0.01
CCDC58Q4VC31 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
CCDC58Q4VC31 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
CCDC58Q4VC31 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC15.09■□□□□ 0.01
CCDC58Q4VC31 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC58Q4VC31 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.09■□□□□ 0.01
CCDC58Q4VC31 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
CCDC58Q4VC31 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
CCDC58Q4VC31 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC15.09■□□□□ 0.01
CCDC58Q4VC31 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
CCDC58Q4VC31 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC15.09■□□□□ 0.01
CCDC58Q4VC31 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC58Q4VC31 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC58Q4VC31 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC15.09■□□□□ 0.01
CCDC58Q4VC31 YBX1P2-201ENST00000489612 999 ntBASIC15.09■□□□□ 0.01
CCDC58Q4VC31 AC010203.1-204ENST00000548782 407 ntBASIC15.09■□□□□ 0.01
CCDC58Q4VC31 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC15.09■□□□□ 0.01
CCDC58Q4VC31 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC58Q4VC31 AL391256.1-201ENST00000443260 1855 ntBASIC15.09■□□□□ 0.01
CCDC58Q4VC31 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC58Q4VC31 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC58Q4VC31 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC58Q4VC31 FAM45BP-202ENST00000592932 1624 ntBASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms