Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 KLF4P1-201ENST00000412782 1185 ntBASIC16.19■□□□□ 0.18
COL28A1Q2UY09 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 RBPMS2P1-201ENST00000437762 623 ntBASIC16.19■□□□□ 0.18
COL28A1Q2UY09 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 PARP8-218ENST00000513738 596 ntTSL 4 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 CU639417.3-201ENST00000624240 1404 ntBASIC16.19■□□□□ 0.18
COL28A1Q2UY09 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.19■□□□□ 0.18
COL28A1Q2UY09 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 AC132938.5-201ENST00000624980 1813 ntBASIC16.18■□□□□ 0.18
COL28A1Q2UY09 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 AL158211.3-201ENST00000607385 239 ntBASIC16.18■□□□□ 0.18
COL28A1Q2UY09 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 BX276092.7-203ENST00000637198 1536 ntBASIC16.18■□□□□ 0.18
COL28A1Q2UY09 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL28A1Q2UY09 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 AL513480.1-201ENST00000451731 511 ntBASIC16.17■□□□□ 0.18
COL28A1Q2UY09 AC079140.1-201ENST00000508039 487 ntBASIC16.17■□□□□ 0.18
COL28A1Q2UY09 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL28A1Q2UY09 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms