Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC10.21□□□□□ -0.78
HSPG2P98160 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC10.21□□□□□ -0.78
HSPG2P98160 ZBTB12BP-201ENST00000314232 1122 ntBASIC10.21□□□□□ -0.78
HSPG2P98160 UFM1-202ENST00000379649 846 ntTSL 4 BASIC10.21□□□□□ -0.78
HSPG2P98160 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC10.21□□□□□ -0.78
HSPG2P98160 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.78
HSPG2P98160 SERBP1P3-201ENST00000459980 809 ntBASIC10.21□□□□□ -0.78
HSPG2P98160 TIMM17BP1-201ENST00000545713 516 ntBASIC10.21□□□□□ -0.78
HSPG2P98160 QPRT-203ENST00000562473 579 ntTSL 3 BASIC10.21□□□□□ -0.78
HSPG2P98160 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC10.21□□□□□ -0.78
HSPG2P98160 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC10.21□□□□□ -0.78
HSPG2P98160 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC10.21□□□□□ -0.78
HSPG2P98160 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC10.21□□□□□ -0.78
HSPG2P98160 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
HSPG2P98160 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
HSPG2P98160 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.78
HSPG2P98160 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
HSPG2P98160 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
HSPG2P98160 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC10.21□□□□□ -0.78
HSPG2P98160 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.78
HSPG2P98160 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC10.21□□□□□ -0.78
HSPG2P98160 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC10.21□□□□□ -0.78
HSPG2P98160 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC10.21□□□□□ -0.78
HSPG2P98160 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
HSPG2P98160 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC10.21□□□□□ -0.78
HSPG2P98160 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC10.21□□□□□ -0.78
HSPG2P98160 AL359711.2-201ENST00000563105 872 ntBASIC10.21□□□□□ -0.78
HSPG2P98160 AL365330.1-201ENST00000607459 531 ntBASIC10.21□□□□□ -0.78
HSPG2P98160 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC10.21□□□□□ -0.78
HSPG2P98160 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
HSPG2P98160 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
HSPG2P98160 FOS-208ENST00000555686 1496 ntTSL 2 BASIC10.21□□□□□ -0.78
HSPG2P98160 HLA-DQB1-201ENST00000374943 1656 ntBASIC10.2□□□□□ -0.78
HSPG2P98160 IMPDH1P4-201ENST00000445028 1534 ntBASIC10.2□□□□□ -0.78
HSPG2P98160 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
HSPG2P98160 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC10.2□□□□□ -0.78
HSPG2P98160 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
HSPG2P98160 PFN1P12-201ENST00000455938 534 ntBASIC10.2□□□□□ -0.78
HSPG2P98160 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC10.2□□□□□ -0.78
HSPG2P98160 MBP-227ENST00000526111 581 ntTSL 4 BASIC10.2□□□□□ -0.78
HSPG2P98160 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC10.2□□□□□ -0.78
HSPG2P98160 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC10.2□□□□□ -0.78
HSPG2P98160 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
HSPG2P98160 AL671710.1-201ENST00000610245 2349 ntBASIC10.2□□□□□ -0.78
HSPG2P98160 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 AC018735.1-201ENST00000437208 1502 ntBASIC10.2□□□□□ -0.78
HSPG2P98160 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC10.2□□□□□ -0.78
HSPG2P98160 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC10.2□□□□□ -0.78
HSPG2P98160 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC10.2□□□□□ -0.78
HSPG2P98160 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC10.2□□□□□ -0.78
HSPG2P98160 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC10.2□□□□□ -0.78
HSPG2P98160 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 AC010328.2-201ENST00000597698 1111 ntBASIC10.2□□□□□ -0.78
HSPG2P98160 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC10.2□□□□□ -0.78
HSPG2P98160 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC10.2□□□□□ -0.78
HSPG2P98160 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC10.2□□□□□ -0.78
HSPG2P98160 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC10.2□□□□□ -0.78
HSPG2P98160 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC10.2□□□□□ -0.78
HSPG2P98160 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC10.2□□□□□ -0.78
HSPG2P98160 PTPA-217ENST00000434095 870 ntTSL 2 BASIC10.2□□□□□ -0.78
HSPG2P98160 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC10.2□□□□□ -0.78
HSPG2P98160 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC10.2□□□□□ -0.78
HSPG2P98160 AC005702.4-201ENST00000618393 416 ntBASIC10.2□□□□□ -0.78
HSPG2P98160 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC10.2□□□□□ -0.78
HSPG2P98160 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC10.2□□□□□ -0.78
HSPG2P98160 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
HSPG2P98160 CLK3P2-201ENST00000427566 1453 ntBASIC10.19□□□□□ -0.78
HSPG2P98160 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC10.19□□□□□ -0.78
HSPG2P98160 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC10.19□□□□□ -0.78
HSPG2P98160 STARD13-205ENST00000439831 945 ntTSL 2 BASIC10.19□□□□□ -0.78
HSPG2P98160 EIF4HP1-201ENST00000453115 687 ntBASIC10.19□□□□□ -0.78
HSPG2P98160 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC10.19□□□□□ -0.78
HSPG2P98160 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC10.19□□□□□ -0.78
HSPG2P98160 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC10.19□□□□□ -0.78
HSPG2P98160 AP003419.4-201ENST00000616071 517 ntBASIC10.19□□□□□ -0.78
HSPG2P98160 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC10.19□□□□□ -0.78
HSPG2P98160 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms