Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
FOXA3P55318 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC12.69□□□□□ -0.38
FOXA3P55318 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC12.69□□□□□ -0.38
FOXA3P55318 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA3P55318 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC12.68□□□□□ -0.38
FOXA3P55318 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC12.68□□□□□ -0.38
FOXA3P55318 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 AC022532.1-201ENST00000624563 1728 ntBASIC12.68□□□□□ -0.38
FOXA3P55318 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC12.68□□□□□ -0.38
FOXA3P55318 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
FOXA3P55318 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 GPR89P-201ENST00000407924 1495 ntBASIC12.68□□□□□ -0.38
FOXA3P55318 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC12.68□□□□□ -0.38
FOXA3P55318 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC12.68□□□□□ -0.38
FOXA3P55318 PON3-205ENST00000451904 1053 ntTSL 3 BASIC12.68□□□□□ -0.38
FOXA3P55318 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC12.68□□□□□ -0.38
FOXA3P55318 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
FOXA3P55318 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC12.68□□□□□ -0.38
FOXA3P55318 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC12.68□□□□□ -0.38
FOXA3P55318 USF2-205ENST00000594064 1179 ntTSL 2 BASIC12.68□□□□□ -0.38
FOXA3P55318 MMD2-204ENST00000612910 778 ntTSL 5 BASIC12.68□□□□□ -0.38
FOXA3P55318 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC12.68□□□□□ -0.38
FOXA3P55318 AL359736.2-201ENST00000621992 437 ntBASIC12.68□□□□□ -0.38
FOXA3P55318 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC12.68□□□□□ -0.38
FOXA3P55318 AL157888.1-201ENST00000631930 593 ntBASIC12.68□□□□□ -0.38
FOXA3P55318 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
FOXA3P55318 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
FOXA3P55318 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC12.68□□□□□ -0.38
FOXA3P55318 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
FOXA3P55318 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC12.68□□□□□ -0.38
FOXA3P55318 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 AMT-206ENST00000458307 1860 ntTSL 2 BASIC12.68□□□□□ -0.38
FOXA3P55318 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
FOXA3P55318 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 TBC1D3P5-201ENST00000579401 1545 ntBASIC12.67□□□□□ -0.38
FOXA3P55318 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC12.67□□□□□ -0.38
FOXA3P55318 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
FOXA3P55318 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC12.67□□□□□ -0.38
FOXA3P55318 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC12.67□□□□□ -0.38
FOXA3P55318 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC12.67□□□□□ -0.38
FOXA3P55318 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC12.67□□□□□ -0.38
FOXA3P55318 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC12.67□□□□□ -0.38
FOXA3P55318 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
FOXA3P55318 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC12.67□□□□□ -0.38
FOXA3P55318 AC090192.1-201ENST00000517740 490 ntBASIC12.67□□□□□ -0.38
FOXA3P55318 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC12.67□□□□□ -0.38
FOXA3P55318 AL512604.3-201ENST00000569583 964 ntBASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms