Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 PTMS-202ENST00000389462 773 ntTSL 2 BASIC18.4■□□□□ 0.54
CLCN3P51790 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.4■□□□□ 0.54
CLCN3P51790 SPDYE14P-201ENST00000442619 822 ntBASIC18.4■□□□□ 0.54
CLCN3P51790 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.4■□□□□ 0.54
CLCN3P51790 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLCN3P51790 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC18.4■□□□□ 0.54
CLCN3P51790 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC18.4■□□□□ 0.54
CLCN3P51790 SSH2-211ENST00000590153 570 ntTSL 4 BASIC18.4■□□□□ 0.54
CLCN3P51790 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CLCN3P51790 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC18.4■□□□□ 0.54
CLCN3P51790 AP001059.3-201ENST00000619053 235 ntBASIC18.4■□□□□ 0.54
CLCN3P51790 AC084121.4-201ENST00000641598 221 ntBASIC18.4■□□□□ 0.54
CLCN3P51790 AF228730.8-201ENST00000642140 221 ntBASIC18.4■□□□□ 0.54
CLCN3P51790 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLCN3P51790 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLCN3P51790 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC18.4■□□□□ 0.54
CLCN3P51790 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLCN3P51790 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLCN3P51790 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLCN3P51790 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
CLCN3P51790 PC-204ENST00000524491 1714 ntTSL 2 BASIC18.4■□□□□ 0.54
CLCN3P51790 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLCN3P51790 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLCN3P51790 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLCN3P51790 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLCN3P51790 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CLCN3P51790 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC18.39■□□□□ 0.54
CLCN3P51790 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC18.39■□□□□ 0.54
CLCN3P51790 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.54
CLCN3P51790 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CLCN3P51790 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CLCN3P51790 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLCN3P51790 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CLCN3P51790 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLCN3P51790 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLCN3P51790 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.39■□□□□ 0.53
CLCN3P51790 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC18.39■□□□□ 0.53
CLCN3P51790 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CLCN3P51790 SYS1-203ENST00000414310 795 ntTSL 3 BASIC18.39■□□□□ 0.53
CLCN3P51790 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC18.39■□□□□ 0.53
CLCN3P51790 WDR53-204ENST00000433160 887 ntTSL 5 BASIC18.39■□□□□ 0.53
CLCN3P51790 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC18.39■□□□□ 0.53
CLCN3P51790 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CLCN3P51790 AC026150.2-201ENST00000564693 1156 ntBASIC18.39■□□□□ 0.53
CLCN3P51790 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
CLCN3P51790 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLCN3P51790 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC18.39■□□□□ 0.53
CLCN3P51790 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CLCN3P51790 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC18.39■□□□□ 0.53
CLCN3P51790 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLCN3P51790 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLCN3P51790 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLCN3P51790 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLCN3P51790 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC18.39■□□□□ 0.53
CLCN3P51790 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18.39■□□□□ 0.53
CLCN3P51790 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLCN3P51790 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLCN3P51790 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CLCN3P51790 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC18.39■□□□□ 0.53
CLCN3P51790 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC18.39■□□□□ 0.53
CLCN3P51790 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CLCN3P51790 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLCN3P51790 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLCN3P51790 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLCN3P51790 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CLCN3P51790 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC18.38■□□□□ 0.53
CLCN3P51790 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLCN3P51790 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLCN3P51790 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLCN3P51790 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLCN3P51790 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLCN3P51790 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLCN3P51790 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLCN3P51790 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLCN3P51790 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLCN3P51790 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLCN3P51790 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLCN3P51790 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.38■□□□□ 0.53
CLCN3P51790 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC18.38■□□□□ 0.53
CLCN3P51790 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC18.38■□□□□ 0.53
CLCN3P51790 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CLCN3P51790 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC18.38■□□□□ 0.53
CLCN3P51790 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.38■□□□□ 0.53
CLCN3P51790 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLCN3P51790 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CLCN3P51790 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLCN3P51790 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC18.38■□□□□ 0.53
CLCN3P51790 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CLCN3P51790 AC015911.4-201ENST00000588022 1070 ntBASIC18.38■□□□□ 0.53
CLCN3P51790 AC005498.2-205ENST00000593218 784 ntBASIC18.38■□□□□ 0.53
CLCN3P51790 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CLCN3P51790 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC18.38■□□□□ 0.53
CLCN3P51790 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC18.38■□□□□ 0.53
CLCN3P51790 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC18.38■□□□□ 0.53
CLCN3P51790 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CLCN3P51790 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLCN3P51790 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLCN3P51790 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLCN3P51790 AL645728.1-201ENST00000366221 2101 ntBASIC18.38■□□□□ 0.53
CLCN3P51790 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms