Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTCFP49711 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTCFP49711 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTCFP49711 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.36■□□□□ 0.69
CTCFP49711 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CTCFP49711 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
CTCFP49711 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.36■□□□□ 0.69
CTCFP49711 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
CTCFP49711 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC19.36■□□□□ 0.69
CTCFP49711 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTCFP49711 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CTCFP49711 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTCFP49711 AC005229.1-201ENST00000392885 409 ntBASIC19.36■□□□□ 0.69
CTCFP49711 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC19.36■□□□□ 0.69
CTCFP49711 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC19.36■□□□□ 0.69
CTCFP49711 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC19.36■□□□□ 0.69
CTCFP49711 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC19.36■□□□□ 0.69
CTCFP49711 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC19.36■□□□□ 0.69
CTCFP49711 PIGL-212ENST00000581006 554 ntTSL 4 BASIC19.36■□□□□ 0.69
CTCFP49711 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC19.36■□□□□ 0.69
CTCFP49711 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC19.36■□□□□ 0.69
CTCFP49711 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC19.36■□□□□ 0.69
CTCFP49711 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTCFP49711 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
CTCFP49711 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTCFP49711 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTCFP49711 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.36■□□□□ 0.69
CTCFP49711 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.36■□□□□ 0.69
CTCFP49711 AC093010.1-201ENST00000473625 1624 ntBASIC19.36■□□□□ 0.69
CTCFP49711 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTCFP49711 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTCFP49711 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CTCFP49711 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CTCFP49711 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
CTCFP49711 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.35■□□□□ 0.69
CTCFP49711 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.35■□□□□ 0.69
CTCFP49711 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CTCFP49711 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
CTCFP49711 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC19.35■□□□□ 0.69
CTCFP49711 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CTCFP49711 AL354751.1-201ENST00000412768 1863 ntBASIC19.35■□□□□ 0.69
CTCFP49711 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CTCFP49711 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CTCFP49711 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CTCFP49711 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CTCFP49711 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CTCFP49711 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CTCFP49711 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
CTCFP49711 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CTCFP49711 AC099336.1-201ENST00000417053 1171 ntBASIC19.35■□□□□ 0.69
CTCFP49711 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CTCFP49711 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.35■□□□□ 0.69
CTCFP49711 IGHJ2P-201ENST00000454480 60 ntBASIC19.35■□□□□ 0.69
CTCFP49711 LDHBP1-201ENST00000455730 1119 ntBASIC19.35■□□□□ 0.69
CTCFP49711 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CTCFP49711 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC19.35■□□□□ 0.69
CTCFP49711 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC19.35■□□□□ 0.69
CTCFP49711 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC19.35■□□□□ 0.69
CTCFP49711 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
CTCFP49711 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC19.35■□□□□ 0.69
CTCFP49711 AC016629.1-201ENST00000596579 586 ntBASIC19.35■□□□□ 0.69
CTCFP49711 RN7SL828P-201ENST00000607615 303 ntBASIC19.35■□□□□ 0.69
CTCFP49711 U62317.3-201ENST00000608319 855 ntBASIC19.35■□□□□ 0.69
CTCFP49711 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CTCFP49711 AC015967.2-201ENST00000624092 234 ntBASIC19.35■□□□□ 0.69
CTCFP49711 AC006435.4-201ENST00000625037 234 ntBASIC19.35■□□□□ 0.69
CTCFP49711 AL356737.1-201ENST00000634391 234 ntBASIC19.35■□□□□ 0.69
CTCFP49711 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
CTCFP49711 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CTCFP49711 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
CTCFP49711 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
CTCFP49711 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.35■□□□□ 0.69
CTCFP49711 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC19.35■□□□□ 0.69
CTCFP49711 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
CTCFP49711 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.34■□□□□ 0.69
CTCFP49711 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CTCFP49711 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CTCFP49711 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CTCFP49711 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CTCFP49711 AC016027.1-202ENST00000607927 1699 ntBASIC19.34■□□□□ 0.69
CTCFP49711 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CTCFP49711 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC19.34■□□□□ 0.69
CTCFP49711 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CTCFP49711 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CTCFP49711 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.34■□□□□ 0.69
CTCFP49711 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
CTCFP49711 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CTCFP49711 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC19.34■□□□□ 0.69
CTCFP49711 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CTCFP49711 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CTCFP49711 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CTCFP49711 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC19.34■□□□□ 0.69
CTCFP49711 PP14571-201ENST00000404327 934 ntTSL 2 BASIC19.34■□□□□ 0.69
CTCFP49711 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC19.34■□□□□ 0.69
CTCFP49711 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC19.34■□□□□ 0.69
CTCFP49711 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC19.34■□□□□ 0.69
CTCFP49711 KRT8P13-201ENST00000463294 1010 ntBASIC19.34■□□□□ 0.69
CTCFP49711 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC19.34■□□□□ 0.69
CTCFP49711 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC19.34■□□□□ 0.69
CTCFP49711 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms