Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
RFX3P48380 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC15.86■□□□□ 0.13
RFX3P48380 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
RFX3P48380 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
RFX3P48380 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
RFX3P48380 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
RFX3P48380 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC15.86■□□□□ 0.13
RFX3P48380 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
RFX3P48380 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC15.86■□□□□ 0.13
RFX3P48380 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC15.86■□□□□ 0.13
RFX3P48380 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
RFX3P48380 AF186996.4-201ENST00000467186 377 ntBASIC15.86■□□□□ 0.13
RFX3P48380 OR7E14P-202ENST00000530490 1290 ntBASIC15.86■□□□□ 0.13
RFX3P48380 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC15.86■□□□□ 0.13
RFX3P48380 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC15.86■□□□□ 0.13
RFX3P48380 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC15.86■□□□□ 0.13
RFX3P48380 AL589182.2-201ENST00000619332 1049 ntBASIC15.86■□□□□ 0.13
RFX3P48380 AL031008.1-201ENST00000619963 541 ntBASIC15.86■□□□□ 0.13
RFX3P48380 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC15.86■□□□□ 0.13
RFX3P48380 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC15.86■□□□□ 0.13
RFX3P48380 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.86■□□□□ 0.13
RFX3P48380 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
RFX3P48380 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
RFX3P48380 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC15.86■□□□□ 0.13
RFX3P48380 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
RFX3P48380 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC15.86■□□□□ 0.13
RFX3P48380 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
RFX3P48380 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
RFX3P48380 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
RFX3P48380 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
RFX3P48380 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
RFX3P48380 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.86■□□□□ 0.13
RFX3P48380 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
RFX3P48380 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
RFX3P48380 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
RFX3P48380 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RFX3P48380 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.85■□□□□ 0.13
RFX3P48380 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RFX3P48380 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RFX3P48380 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
RFX3P48380 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RFX3P48380 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC15.85■□□□□ 0.13
RFX3P48380 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RFX3P48380 LTF-203ENST00000426532 2494 ntTSL 2 BASIC15.85■□□□□ 0.13
RFX3P48380 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.85■□□□□ 0.13
RFX3P48380 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RFX3P48380 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
RFX3P48380 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RFX3P48380 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RFX3P48380 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
RFX3P48380 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
RFX3P48380 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RFX3P48380 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
RFX3P48380 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RFX3P48380 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC15.85■□□□□ 0.13
RFX3P48380 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC15.85■□□□□ 0.13
RFX3P48380 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RFX3P48380 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
RFX3P48380 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC15.85■□□□□ 0.13
RFX3P48380 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC15.85■□□□□ 0.13
RFX3P48380 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC15.85■□□□□ 0.13
RFX3P48380 AL353135.1-201ENST00000606729 504 ntBASIC15.85■□□□□ 0.13
RFX3P48380 AL139424.1-201ENST00000607572 797 ntBASIC15.85■□□□□ 0.13
RFX3P48380 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RFX3P48380 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RFX3P48380 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RFX3P48380 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
RFX3P48380 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.85■□□□□ 0.13
RFX3P48380 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.85■□□□□ 0.13
RFX3P48380 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.85■□□□□ 0.13
RFX3P48380 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC15.85■□□□□ 0.13
RFX3P48380 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RFX3P48380 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RFX3P48380 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
RFX3P48380 AC046158.3-201ENST00000624947 2558 ntBASIC15.84■□□□□ 0.13
RFX3P48380 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
RFX3P48380 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
RFX3P48380 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RFX3P48380 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RFX3P48380 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
RFX3P48380 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
RFX3P48380 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RFX3P48380 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RFX3P48380 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.84■□□□□ 0.13
RFX3P48380 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.84■□□□□ 0.13
RFX3P48380 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RFX3P48380 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RFX3P48380 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
RFX3P48380 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC15.84■□□□□ 0.13
RFX3P48380 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
RFX3P48380 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC15.84■□□□□ 0.13
RFX3P48380 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC15.84■□□□□ 0.13
RFX3P48380 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
RFX3P48380 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC15.84■□□□□ 0.13
RFX3P48380 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC15.84■□□□□ 0.13
RFX3P48380 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC15.84■□□□□ 0.13
RFX3P48380 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC15.84■□□□□ 0.13
RFX3P48380 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC15.84■□□□□ 0.13
RFX3P48380 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC15.84■□□□□ 0.13
RFX3P48380 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms