Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.45■□□□□ 0.38
PTPN9P43378 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN9P43378 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN9P43378 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
PTPN9P43378 AC007967.2-201ENST00000432613 625 ntBASIC17.45■□□□□ 0.38
PTPN9P43378 AL591424.1-201ENST00000442569 1213 ntBASIC17.45■□□□□ 0.38
PTPN9P43378 KRT18P2-201ENST00000447938 1258 ntBASIC17.45■□□□□ 0.38
PTPN9P43378 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.45■□□□□ 0.38
PTPN9P43378 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.45■□□□□ 0.38
PTPN9P43378 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
PTPN9P43378 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.45■□□□□ 0.38
PTPN9P43378 MIR3909-201ENST00000579518 119 ntBASIC17.45■□□□□ 0.38
PTPN9P43378 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.45■□□□□ 0.38
PTPN9P43378 AC023141.13-201ENST00000604991 943 ntBASIC17.45■□□□□ 0.38
PTPN9P43378 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN9P43378 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.45■□□□□ 0.38
PTPN9P43378 AL118508.1-201ENST00000613502 2345 ntBASIC17.45■□□□□ 0.38
PTPN9P43378 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.45■□□□□ 0.38
PTPN9P43378 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN9P43378 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN9P43378 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.45■□□□□ 0.38
PTPN9P43378 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN9P43378 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN9P43378 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
PTPN9P43378 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN9P43378 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.45■□□□□ 0.38
PTPN9P43378 TNRC18P3-201ENST00000441896 2691 ntBASIC17.44■□□□□ 0.38
PTPN9P43378 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.44■□□□□ 0.38
PTPN9P43378 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.44■□□□□ 0.38
PTPN9P43378 AL031731.1-201ENST00000642131 2094 ntBASIC17.44■□□□□ 0.38
PTPN9P43378 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
PTPN9P43378 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.44■□□□□ 0.38
PTPN9P43378 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN9P43378 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN9P43378 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN9P43378 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
PTPN9P43378 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
PTPN9P43378 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
PTPN9P43378 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.44■□□□□ 0.38
PTPN9P43378 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN9P43378 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN9P43378 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.44■□□□□ 0.38
PTPN9P43378 RNU1-129P-201ENST00000384064 167 ntBASIC17.44■□□□□ 0.38
PTPN9P43378 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.44■□□□□ 0.38
PTPN9P43378 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.44■□□□□ 0.38
PTPN9P43378 U1.21-201ENST00000580816 167 ntBASIC17.44■□□□□ 0.38
PTPN9P43378 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.44■□□□□ 0.38
PTPN9P43378 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
PTPN9P43378 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN9P43378 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN9P43378 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN9P43378 GGT3P-204ENST00000453783 1664 ntBASIC17.44■□□□□ 0.38
PTPN9P43378 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PTPN9P43378 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN9P43378 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN9P43378 GGT4P-201ENST00000623672 1708 ntBASIC17.44■□□□□ 0.38
PTPN9P43378 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN9P43378 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN9P43378 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.44■□□□□ 0.38
PTPN9P43378 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN9P43378 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
PTPN9P43378 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN9P43378 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN9P43378 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
PTPN9P43378 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN9P43378 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.43■□□□□ 0.38
PTPN9P43378 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN9P43378 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN9P43378 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
PTPN9P43378 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN9P43378 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.43■□□□□ 0.38
PTPN9P43378 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
PTPN9P43378 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN9P43378 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
PTPN9P43378 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.43■□□□□ 0.38
PTPN9P43378 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.43■□□□□ 0.38
PTPN9P43378 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.43■□□□□ 0.38
PTPN9P43378 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.43■□□□□ 0.38
PTPN9P43378 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.43■□□□□ 0.38
PTPN9P43378 AC140113.2-201ENST00000604370 208 ntBASIC17.43■□□□□ 0.38
PTPN9P43378 AC027601.4-201ENST00000611259 610 ntBASIC17.43■□□□□ 0.38
PTPN9P43378 FAM197Y3-203ENST00000618346 717 ntBASIC17.43■□□□□ 0.38
PTPN9P43378 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN9P43378 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
PTPN9P43378 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN9P43378 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN9P43378 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN9P43378 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.43■□□□□ 0.38
PTPN9P43378 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
PTPN9P43378 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
PTPN9P43378 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
PTPN9P43378 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.43■□□□□ 0.38
PTPN9P43378 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN9P43378 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.42■□□□□ 0.38
PTPN9P43378 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN9P43378 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
PTPN9P43378 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms