Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RN7SL560P-201ENST00000577943 264 ntBASIC20.06■□□□□ 0.8
BRCA1P38398 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC20.06■□□□□ 0.8
BRCA1P38398 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRCA1P38398 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRCA1P38398 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.06■□□□□ 0.8
BRCA1P38398 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRCA1P38398 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRCA1P38398 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRCA1P38398 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRCA1P38398 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRCA1P38398 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRCA1P38398 AGER-203ENST00000375065 665 ntTSL 2 BASIC20.05■□□□□ 0.8
BRCA1P38398 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
BRCA1P38398 ELK2AP-201ENST00000392510 1007 ntBASIC20.05■□□□□ 0.8
BRCA1P38398 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC20.05■□□□□ 0.8
BRCA1P38398 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
BRCA1P38398 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC20.05■□□□□ 0.8
BRCA1P38398 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC20.05■□□□□ 0.8
BRCA1P38398 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC20.05■□□□□ 0.8
BRCA1P38398 AL021578.1-201ENST00000613646 709 ntBASIC20.05■□□□□ 0.8
BRCA1P38398 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.05■□□□□ 0.8
BRCA1P38398 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
BRCA1P38398 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
BRCA1P38398 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC20.05■□□□□ 0.8
BRCA1P38398 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.05■□□□□ 0.8
BRCA1P38398 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.05■□□□□ 0.8
BRCA1P38398 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
BRCA1P38398 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
BRCA1P38398 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
BRCA1P38398 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC20.05■□□□□ 0.8
BRCA1P38398 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
BRCA1P38398 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
BRCA1P38398 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
BRCA1P38398 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
BRCA1P38398 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
BRCA1P38398 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC20.05■□□□□ 0.8
BRCA1P38398 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC20.05■□□□□ 0.8
BRCA1P38398 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC20.05■□□□□ 0.8
BRCA1P38398 CALR4P-201ENST00000431943 946 ntBASIC20.05■□□□□ 0.8
BRCA1P38398 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
BRCA1P38398 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC20.05■□□□□ 0.8
BRCA1P38398 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
BRCA1P38398 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC20.05■□□□□ 0.8
BRCA1P38398 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
BRCA1P38398 AC124947.2-201ENST00000547118 1133 ntBASIC20.05■□□□□ 0.8
BRCA1P38398 AC036164.1-201ENST00000570544 333 ntBASIC20.05■□□□□ 0.8
BRCA1P38398 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC20.05■□□□□ 0.8
BRCA1P38398 AC244669.2-201ENST00000612320 853 ntBASIC20.05■□□□□ 0.8
BRCA1P38398 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC20.05■□□□□ 0.8
BRCA1P38398 CU634019.7-201ENST00000624153 1185 ntBASIC20.05■□□□□ 0.8
BRCA1P38398 FP236241.2-201ENST00000624906 1185 ntBASIC20.05■□□□□ 0.8
BRCA1P38398 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
BRCA1P38398 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.05■□□□□ 0.8
BRCA1P38398 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
BRCA1P38398 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC20.04■□□□□ 0.8
BRCA1P38398 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
BRCA1P38398 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.04■□□□□ 0.8
BRCA1P38398 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
BRCA1P38398 AC016396.2-201ENST00000562575 1417 ntBASIC20.04■□□□□ 0.8
BRCA1P38398 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
BRCA1P38398 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
BRCA1P38398 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.04■□□□□ 0.8
BRCA1P38398 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC20.04■□□□□ 0.8
BRCA1P38398 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
BRCA1P38398 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC20.04■□□□□ 0.8
BRCA1P38398 TPO-206ENST00000382269 1155 ntTSL 5 BASIC20.04■□□□□ 0.8
BRCA1P38398 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
BRCA1P38398 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
BRCA1P38398 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC20.04■□□□□ 0.8
BRCA1P38398 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
BRCA1P38398 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC20.04■□□□□ 0.8
BRCA1P38398 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC20.04■□□□□ 0.8
BRCA1P38398 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC20.04■□□□□ 0.8
BRCA1P38398 RN7SL190P-201ENST00000582519 257 ntBASIC20.04■□□□□ 0.8
BRCA1P38398 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC20.04■□□□□ 0.8
BRCA1P38398 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
BRCA1P38398 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC20.04■□□□□ 0.8
BRCA1P38398 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.04■□□□□ 0.8
BRCA1P38398 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
BRCA1P38398 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
BRCA1P38398 AC006538.1-201ENST00000567905 1585 ntBASIC20.04■□□□□ 0.8
BRCA1P38398 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
BRCA1P38398 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
BRCA1P38398 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
BRCA1P38398 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC20.04■□□□□ 0.8
BRCA1P38398 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
BRCA1P38398 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC20.04■□□□□ 0.8
BRCA1P38398 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
BRCA1P38398 Z97205.2-201ENST00000564697 1639 ntBASIC20.03■□□□□ 0.8
BRCA1P38398 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
BRCA1P38398 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
BRCA1P38398 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
BRCA1P38398 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
BRCA1P38398 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
BRCA1P38398 HIST3H2BA-201ENST00000436555 524 ntBASIC20.03■□□□□ 0.8
BRCA1P38398 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC20.03■□□□□ 0.8
BRCA1P38398 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC20.03■□□□□ 0.8
BRCA1P38398 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC20.03■□□□□ 0.8
BRCA1P38398 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC20.03■□□□□ 0.8
BRCA1P38398 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms