Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
HLA-DMBP28068 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC12.88□□□□□ -0.35
HLA-DMBP28068 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC12.88□□□□□ -0.35
HLA-DMBP28068 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
HLA-DMBP28068 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
HLA-DMBP28068 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 TSPY19P-201ENST00000418461 509 ntBASIC12.87□□□□□ -0.35
HLA-DMBP28068 TSPY18P-201ENST00000441642 509 ntBASIC12.87□□□□□ -0.35
HLA-DMBP28068 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 COPE-211ENST00000600932 1144 ntTSL 5 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HLA-DMBP28068 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
HLA-DMBP28068 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC12.86□□□□□ -0.35
HLA-DMBP28068 AC132872.4-202ENST00000622924 2756 ntBASIC12.86□□□□□ -0.35
HLA-DMBP28068 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC12.86□□□□□ -0.35
HLA-DMBP28068 HNRNPRP1-201ENST00000453465 1695 ntBASIC12.86□□□□□ -0.35
HLA-DMBP28068 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC12.86□□□□□ -0.35
HLA-DMBP28068 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC12.86□□□□□ -0.35
HLA-DMBP28068 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC12.86□□□□□ -0.35
HLA-DMBP28068 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC12.86□□□□□ -0.35
HLA-DMBP28068 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
HLA-DMBP28068 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC12.86□□□□□ -0.35
HLA-DMBP28068 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 LINC00982-205ENST00000420957 435 ntBASIC12.86□□□□□ -0.35
HLA-DMBP28068 ACTG1P4-201ENST00000425123 1122 ntBASIC12.86□□□□□ -0.35
HLA-DMBP28068 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
HLA-DMBP28068 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC12.86□□□□□ -0.35
HLA-DMBP28068 SRP19-202ENST00000445150 833 ntTSL 2 BASIC12.86□□□□□ -0.35
HLA-DMBP28068 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC12.86□□□□□ -0.35
HLA-DMBP28068 KRT18P31-201ENST00000506277 1292 ntBASIC12.86□□□□□ -0.35
HLA-DMBP28068 UNC93B7-201ENST00000509439 705 ntBASIC12.86□□□□□ -0.35
HLA-DMBP28068 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms