Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.19■□□□□ 0.34
COL6A3P12111 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A3P12111 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.19■□□□□ 0.34
COL6A3P12111 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
COL6A3P12111 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A3P12111 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.19■□□□□ 0.34
COL6A3P12111 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A3P12111 HNRNPA1P13-201ENST00000510646 963 ntBASIC17.19■□□□□ 0.34
COL6A3P12111 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC17.19■□□□□ 0.34
COL6A3P12111 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC17.19■□□□□ 0.34
COL6A3P12111 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.19■□□□□ 0.34
COL6A3P12111 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.19■□□□□ 0.34
COL6A3P12111 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A3P12111 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.19■□□□□ 0.34
COL6A3P12111 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A3P12111 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.19■□□□□ 0.34
COL6A3P12111 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A3P12111 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.19■□□□□ 0.34
COL6A3P12111 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A3P12111 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A3P12111 EEF1DP6-201ENST00000449232 372 ntBASIC17.19■□□□□ 0.34
COL6A3P12111 SERBP1P3-201ENST00000459980 809 ntBASIC17.19■□□□□ 0.34
COL6A3P12111 RN7SL399P-201ENST00000471648 279 ntBASIC17.19■□□□□ 0.34
COL6A3P12111 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC17.19■□□□□ 0.34
COL6A3P12111 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC17.19■□□□□ 0.34
COL6A3P12111 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC17.19■□□□□ 0.34
COL6A3P12111 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A3P12111 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
COL6A3P12111 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A3P12111 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.19■□□□□ 0.34
COL6A3P12111 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.18■□□□□ 0.34
COL6A3P12111 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A3P12111 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A3P12111 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A3P12111 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A3P12111 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC17.18■□□□□ 0.34
COL6A3P12111 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A3P12111 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC17.18■□□□□ 0.34
COL6A3P12111 AP000346.4-201ENST00000614827 381 ntBASIC17.18■□□□□ 0.34
COL6A3P12111 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
COL6A3P12111 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC17.18■□□□□ 0.34
COL6A3P12111 AL139011.1-202ENST00000642063 584 ntBASIC17.18■□□□□ 0.34
COL6A3P12111 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A3P12111 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.18■□□□□ 0.34
COL6A3P12111 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A3P12111 GRN-222ENST00000639447 1314 ntTSL 2 BASIC17.18■□□□□ 0.34
COL6A3P12111 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A3P12111 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A3P12111 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A3P12111 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A3P12111 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.18■□□□□ 0.34
COL6A3P12111 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
COL6A3P12111 NKAIN1P1-201ENST00000435754 582 ntBASIC17.18■□□□□ 0.34
COL6A3P12111 CFL1-206ENST00000527344 962 ntTSL 2 BASIC17.18■□□□□ 0.34
COL6A3P12111 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC17.18■□□□□ 0.34
COL6A3P12111 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC17.18■□□□□ 0.34
COL6A3P12111 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC17.18■□□□□ 0.34
COL6A3P12111 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A3P12111 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
COL6A3P12111 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A3P12111 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.18■□□□□ 0.34
COL6A3P12111 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A3P12111 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A3P12111 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC17.18■□□□□ 0.34
COL6A3P12111 CTBP2P4-201ENST00000513884 920 ntBASIC17.18■□□□□ 0.34
COL6A3P12111 RARRES2P5-201ENST00000564013 466 ntBASIC17.18■□□□□ 0.34
COL6A3P12111 MIR3147-201ENST00000577811 66 ntBASIC17.18■□□□□ 0.34
COL6A3P12111 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC17.18■□□□□ 0.34
COL6A3P12111 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC17.18■□□□□ 0.34
COL6A3P12111 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC17.18■□□□□ 0.34
COL6A3P12111 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A3P12111 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A3P12111 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
COL6A3P12111 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A3P12111 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
COL6A3P12111 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.17■□□□□ 0.34
COL6A3P12111 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A3P12111 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
COL6A3P12111 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
COL6A3P12111 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC17.17■□□□□ 0.34
COL6A3P12111 MAX-210ENST00000555419 765 ntTSL 5 BASIC17.17■□□□□ 0.34
COL6A3P12111 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.17■□□□□ 0.34
COL6A3P12111 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.17■□□□□ 0.34
COL6A3P12111 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A3P12111 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.17■□□□□ 0.34
COL6A3P12111 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A3P12111 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.17■□□□□ 0.34
COL6A3P12111 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A3P12111 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC17.17■□□□□ 0.34
COL6A3P12111 REXO1L9P-201ENST00000604264 2108 ntBASIC17.17■□□□□ 0.34
COL6A3P12111 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
COL6A3P12111 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.17■□□□□ 0.34
COL6A3P12111 IMPDH1P4-201ENST00000445028 1534 ntBASIC17.17■□□□□ 0.34
COL6A3P12111 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
COL6A3P12111 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.17■□□□□ 0.34
COL6A3P12111 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.16■□□□□ 0.34
COL6A3P12111 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.16■□□□□ 0.34
COL6A3P12111 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A3P12111 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A3P12111 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms