Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM1P09493 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
TPM1P09493 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TPM1P09493 HYMAI-201ENST00000635591 3347 ntBASIC18.6■□□□□ 0.57
TPM1P09493 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
TPM1P09493 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TPM1P09493 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
TPM1P09493 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM1P09493 AL021920.2-201ENST00000624828 1351 ntBASIC18.6■□□□□ 0.57
TPM1P09493 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM1P09493 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TPM1P09493 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC18.6■□□□□ 0.57
TPM1P09493 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM1P09493 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC18.6■□□□□ 0.57
TPM1P09493 AL645929.1-201ENST00000420084 975 ntBASIC18.6■□□□□ 0.57
TPM1P09493 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.6■□□□□ 0.57
TPM1P09493 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.6■□□□□ 0.57
TPM1P09493 VENTXP7-201ENST00000475503 772 ntBASIC18.6■□□□□ 0.57
TPM1P09493 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TPM1P09493 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TPM1P09493 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
TPM1P09493 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.6■□□□□ 0.57
TPM1P09493 AC133561.5-201ENST00000635547 218 ntBASIC18.6■□□□□ 0.57
TPM1P09493 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM1P09493 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC18.6■□□□□ 0.57
TPM1P09493 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM1P09493 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM1P09493 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM1P09493 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TPM1P09493 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
TPM1P09493 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM1P09493 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
TPM1P09493 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC18.6■□□□□ 0.57
TPM1P09493 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC18.6■□□□□ 0.57
TPM1P09493 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TPM1P09493 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
TPM1P09493 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
TPM1P09493 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TPM1P09493 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TPM1P09493 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.59■□□□□ 0.57
TPM1P09493 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TPM1P09493 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.59■□□□□ 0.57
TPM1P09493 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.59■□□□□ 0.57
TPM1P09493 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC18.59■□□□□ 0.57
TPM1P09493 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TPM1P09493 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
TPM1P09493 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TPM1P09493 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TPM1P09493 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
TPM1P09493 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
TPM1P09493 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TPM1P09493 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TPM1P09493 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
TPM1P09493 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TPM1P09493 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TPM1P09493 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
TPM1P09493 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TPM1P09493 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
TPM1P09493 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TPM1P09493 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.59■□□□□ 0.57
TPM1P09493 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC18.59■□□□□ 0.57
TPM1P09493 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
TPM1P09493 AC092364.2-201ENST00000596710 2692 ntBASIC18.59■□□□□ 0.57
TPM1P09493 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC18.59■□□□□ 0.57
TPM1P09493 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TPM1P09493 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.59■□□□□ 0.57
TPM1P09493 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TPM1P09493 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
TPM1P09493 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
TPM1P09493 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC18.58■□□□□ 0.57
TPM1P09493 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
TPM1P09493 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC18.58■□□□□ 0.57
TPM1P09493 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TPM1P09493 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TPM1P09493 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
TPM1P09493 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
TPM1P09493 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
TPM1P09493 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
TPM1P09493 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TPM1P09493 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TPM1P09493 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
TPM1P09493 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
TPM1P09493 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TPM1P09493 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TPM1P09493 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TPM1P09493 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC18.58■□□□□ 0.57
TPM1P09493 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TPM1P09493 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.58■□□□□ 0.56
TPM1P09493 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TPM1P09493 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TPM1P09493 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TPM1P09493 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TPM1P09493 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TPM1P09493 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC18.58■□□□□ 0.56
TPM1P09493 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC18.58■□□□□ 0.56
TPM1P09493 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TPM1P09493 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TPM1P09493 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TPM1P09493 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC18.58■□□□□ 0.56
TPM1P09493 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms