Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC11O43248 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC11O43248 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.05■□□□□ 0.32
HOXC11O43248 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC11O43248 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC11O43248 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.05■□□□□ 0.32
HOXC11O43248 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.05■□□□□ 0.32
HOXC11O43248 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC17.05■□□□□ 0.32
HOXC11O43248 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.05■□□□□ 0.32
HOXC11O43248 AJ011932.1-201ENST00000621707 465 ntBASIC17.05■□□□□ 0.32
HOXC11O43248 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC11O43248 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC11O43248 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.05■□□□□ 0.32
HOXC11O43248 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC11O43248 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC11O43248 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.05■□□□□ 0.32
HOXC11O43248 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
HOXC11O43248 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC11O43248 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.05■□□□□ 0.32
HOXC11O43248 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.04■□□□□ 0.32
HOXC11O43248 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.04■□□□□ 0.32
HOXC11O43248 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.04■□□□□ 0.32
HOXC11O43248 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
HOXC11O43248 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC11O43248 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.04■□□□□ 0.32
HOXC11O43248 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC11O43248 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC11O43248 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC11O43248 CALY-203ENST00000368558 825 ntTSL 5 BASIC17.04■□□□□ 0.32
HOXC11O43248 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
HOXC11O43248 BASP1P1-201ENST00000430708 665 ntBASIC17.04■□□□□ 0.32
HOXC11O43248 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC11O43248 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
HOXC11O43248 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.04■□□□□ 0.32
HOXC11O43248 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.04■□□□□ 0.32
HOXC11O43248 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.04■□□□□ 0.32
HOXC11O43248 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.04■□□□□ 0.32
HOXC11O43248 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.04■□□□□ 0.32
HOXC11O43248 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC11O43248 AL158211.3-201ENST00000607385 239 ntBASIC17.04■□□□□ 0.32
HOXC11O43248 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.04■□□□□ 0.32
HOXC11O43248 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.04■□□□□ 0.32
HOXC11O43248 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC11O43248 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC11O43248 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC11O43248 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
HOXC11O43248 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.04■□□□□ 0.32
HOXC11O43248 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.04■□□□□ 0.32
HOXC11O43248 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC11O43248 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC11O43248 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC11O43248 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC11O43248 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.03■□□□□ 0.32
HOXC11O43248 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.03■□□□□ 0.32
HOXC11O43248 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC11O43248 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.03■□□□□ 0.32
HOXC11O43248 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC11O43248 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC11O43248 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
HOXC11O43248 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
HOXC11O43248 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC11O43248 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
HOXC11O43248 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.03■□□□□ 0.32
HOXC11O43248 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.03■□□□□ 0.32
HOXC11O43248 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC11O43248 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.03■□□□□ 0.32
HOXC11O43248 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.03■□□□□ 0.32
HOXC11O43248 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC11O43248 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC11O43248 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.03■□□□□ 0.32
HOXC11O43248 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC11O43248 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.03■□□□□ 0.32
HOXC11O43248 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC11O43248 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC11O43248 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC11O43248 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
HOXC11O43248 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
HOXC11O43248 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.03■□□□□ 0.32
HOXC11O43248 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC11O43248 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.03■□□□□ 0.32
HOXC11O43248 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC11O43248 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
HOXC11O43248 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC11O43248 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.03■□□□□ 0.32
HOXC11O43248 FO538757.1-201ENST00000623083 1397 ntBASIC17.02■□□□□ 0.32
HOXC11O43248 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.02■□□□□ 0.32
HOXC11O43248 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
HOXC11O43248 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC11O43248 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC11O43248 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC11O43248 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC11O43248 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
HOXC11O43248 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC11O43248 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC11O43248 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC11O43248 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC11O43248 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC11O43248 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC11O43248 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.02■□□□□ 0.32
HOXC11O43248 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms