Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 AC104989.1-201ENST00000519711 778 ntBASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 AC068587.10-201ENST00000641210 219 ntBASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 MIR1908-201ENST00000410394 80 ntBASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
ZNF541Q9H0D2 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
ZNF541Q9H0D2 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.89■□□□□ 0.78
ZNF541Q9H0D2 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC19.89■□□□□ 0.78
ZNF541Q9H0D2 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
ZNF541Q9H0D2 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 BCYRN1-201ENST00000418539 200 ntBASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 MEP1AP4-201ENST00000423244 1087 ntBASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 NAA38-207ENST00000576861 556 ntTSL 3 BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 TMEM261P1-201ENST00000604899 340 ntBASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 RPSAP52-203ENST00000622976 1023 ntBASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
ZNF541Q9H0D2 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 AC004945.1-201ENST00000416738 983 ntBASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 SDHAP3-202ENST00000515467 728 ntBASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 SIGLEC29P-201ENST00000599873 1114 ntBASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 KRT8P12-202ENST00000472924 1397 ntBASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms