Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
USB1Q9BQ65 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
USB1Q9BQ65 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
USB1Q9BQ65 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
USB1Q9BQ65 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
USB1Q9BQ65 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
USB1Q9BQ65 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 CYGB-205ENST00000590175 830 ntTSL 3 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
USB1Q9BQ65 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 AC023511.2-201ENST00000618803 211 ntBASIC15.14■□□□□ 0.01
USB1Q9BQ65 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
USB1Q9BQ65 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
USB1Q9BQ65 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
USB1Q9BQ65 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
USB1Q9BQ65 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
USB1Q9BQ65 FER1L4-210ENST00000615531 5998 ntBASIC15.14■□□□□ 0.01
USB1Q9BQ65 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
USB1Q9BQ65 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
USB1Q9BQ65 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
USB1Q9BQ65 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
USB1Q9BQ65 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USB1Q9BQ65 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
USB1Q9BQ65 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
USB1Q9BQ65 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
USB1Q9BQ65 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USB1Q9BQ65 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USB1Q9BQ65 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USB1Q9BQ65 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USB1Q9BQ65 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USB1Q9BQ65 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USB1Q9BQ65 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
USB1Q9BQ65 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
USB1Q9BQ65 CRYGEP-201ENST00000412192 528 ntBASIC15.13■□□□□ 0.01
USB1Q9BQ65 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.13■□□□□ 0.01
USB1Q9BQ65 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USB1Q9BQ65 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
USB1Q9BQ65 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.13■□□□□ 0.01
USB1Q9BQ65 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USB1Q9BQ65 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 AL671883.3-201ENST00000603274 991 ntBASIC15.13■□□□□ 0.01
USB1Q9BQ65 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
USB1Q9BQ65 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
USB1Q9BQ65 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USB1Q9BQ65 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC15.13■□□□□ 0.01
USB1Q9BQ65 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USB1Q9BQ65 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USB1Q9BQ65 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC15.12■□□□□ 0.01
USB1Q9BQ65 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USB1Q9BQ65 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USB1Q9BQ65 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USB1Q9BQ65 AC006504.4-201ENST00000592118 1568 ntBASIC15.12■□□□□ 0.01
USB1Q9BQ65 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
USB1Q9BQ65 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms