Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
LRCH3Q96II8 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LRCH3Q96II8 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LRCH3Q96II8 AC093010.1-201ENST00000473625 1624 ntBASIC18.13■□□□□ 0.49
LRCH3Q96II8 AC126763.1-201ENST00000552015 2118 ntBASIC18.13■□□□□ 0.49
LRCH3Q96II8 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LRCH3Q96II8 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.13■□□□□ 0.49
LRCH3Q96II8 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LRCH3Q96II8 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LRCH3Q96II8 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.13■□□□□ 0.49
LRCH3Q96II8 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LRCH3Q96II8 AP000997.3-201ENST00000623333 2250 ntBASIC18.13■□□□□ 0.49
LRCH3Q96II8 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
LRCH3Q96II8 STX1A-203ENST00000395155 783 ntTSL 2 BASIC18.13■□□□□ 0.49
LRCH3Q96II8 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LRCH3Q96II8 RASL12-203ENST00000434605 982 ntTSL 2 BASIC18.13■□□□□ 0.49
LRCH3Q96II8 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
LRCH3Q96II8 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LRCH3Q96II8 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LRCH3Q96II8 AC007389.4-201ENST00000454674 793 ntBASIC18.13■□□□□ 0.49
LRCH3Q96II8 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LRCH3Q96II8 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LRCH3Q96II8 DUTP2-201ENST00000519164 463 ntBASIC18.13■□□□□ 0.49
LRCH3Q96II8 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC18.13■□□□□ 0.49
LRCH3Q96II8 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC18.13■□□□□ 0.49
LRCH3Q96II8 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC18.13■□□□□ 0.49
LRCH3Q96II8 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LRCH3Q96II8 RPS24-214ENST00000613865 538 ntTSL 5 BASIC18.13■□□□□ 0.49
LRCH3Q96II8 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.13■□□□□ 0.49
LRCH3Q96II8 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LRCH3Q96II8 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LRCH3Q96II8 SLC7A15P-201ENST00000424028 1363 ntBASIC18.13■□□□□ 0.49
LRCH3Q96II8 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.13■□□□□ 0.49
LRCH3Q96II8 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.13■□□□□ 0.49
LRCH3Q96II8 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LRCH3Q96II8 AC012569.1-201ENST00000591191 1524 ntBASIC18.13■□□□□ 0.49
LRCH3Q96II8 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
LRCH3Q96II8 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LRCH3Q96II8 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LRCH3Q96II8 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LRCH3Q96II8 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LRCH3Q96II8 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.12■□□□□ 0.49
LRCH3Q96II8 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
LRCH3Q96II8 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
LRCH3Q96II8 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.12■□□□□ 0.49
LRCH3Q96II8 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LRCH3Q96II8 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LRCH3Q96II8 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.12■□□□□ 0.49
LRCH3Q96II8 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LRCH3Q96II8 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LRCH3Q96II8 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LRCH3Q96II8 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LRCH3Q96II8 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC18.12■□□□□ 0.49
LRCH3Q96II8 BOLA2P3-201ENST00000404566 256 ntBASIC18.12■□□□□ 0.49
LRCH3Q96II8 CENPM-206ENST00000407253 818 ntTSL 2 BASIC18.12■□□□□ 0.49
LRCH3Q96II8 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LRCH3Q96II8 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LRCH3Q96II8 MTND6P24-201ENST00000440466 518 ntBASIC18.12■□□□□ 0.49
LRCH3Q96II8 MYCLP2-201ENST00000449268 967 ntBASIC18.12■□□□□ 0.49
LRCH3Q96II8 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC18.12■□□□□ 0.49
LRCH3Q96II8 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC18.12■□□□□ 0.49
LRCH3Q96II8 SPDYE18-201ENST00000510091 1050 ntBASIC18.12■□□□□ 0.49
LRCH3Q96II8 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC18.12■□□□□ 0.49
LRCH3Q96II8 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC18.12■□□□□ 0.49
LRCH3Q96II8 AGER-214ENST00000538695 487 ntTSL 2 BASIC18.12■□□□□ 0.49
LRCH3Q96II8 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
LRCH3Q96II8 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC18.12■□□□□ 0.49
LRCH3Q96II8 AL589739.1-201ENST00000607720 493 ntBASIC18.12■□□□□ 0.49
LRCH3Q96II8 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LRCH3Q96II8 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC18.12■□□□□ 0.49
LRCH3Q96II8 CETN4P-206ENST00000642099 2168 ntBASIC18.12■□□□□ 0.49
LRCH3Q96II8 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LRCH3Q96II8 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LRCH3Q96II8 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
LRCH3Q96II8 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.12■□□□□ 0.49
LRCH3Q96II8 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.12■□□□□ 0.49
LRCH3Q96II8 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LRCH3Q96II8 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRCH3Q96II8 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRCH3Q96II8 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRCH3Q96II8 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRCH3Q96II8 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRCH3Q96II8 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.11■□□□□ 0.49
LRCH3Q96II8 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRCH3Q96II8 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRCH3Q96II8 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRCH3Q96II8 AC142381.1-201ENST00000426099 345 ntBASIC18.11■□□□□ 0.49
LRCH3Q96II8 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LRCH3Q96II8 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRCH3Q96II8 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC18.11■□□□□ 0.49
LRCH3Q96II8 ELK1P1-201ENST00000485699 580 ntBASIC18.11■□□□□ 0.49
LRCH3Q96II8 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC18.11■□□□□ 0.49
LRCH3Q96II8 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC18.11■□□□□ 0.49
LRCH3Q96II8 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC18.11■□□□□ 0.49
LRCH3Q96II8 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LRCH3Q96II8 TUBB1P2-201ENST00000422712 1306 ntBASIC18.11■□□□□ 0.49
LRCH3Q96II8 TUBB1P1-201ENST00000503144 1300 ntBASIC18.11■□□□□ 0.49
LRCH3Q96II8 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LRCH3Q96II8 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC18.11■□□□□ 0.49
LRCH3Q96II8 BX276092.7-203ENST00000637198 1536 ntBASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms