Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.07■□□□□ 0
SNRNP40Q96DI7 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
SNRNP40Q96DI7 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC15.07■□□□□ 0
SNRNP40Q96DI7 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
SNRNP40Q96DI7 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
SNRNP40Q96DI7 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SNRNP40Q96DI7 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
SNRNP40Q96DI7 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.07■□□□□ 0
SNRNP40Q96DI7 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 HLA-V-201ENST00000429037 534 ntBASIC15.07■□□□□ 0
SNRNP40Q96DI7 TMPRSS11CP-201ENST00000453277 683 ntBASIC15.07■□□□□ 0
SNRNP40Q96DI7 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 CDK4-206ENST00000549606 558 ntTSL 2 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 AC021097.1-201ENST00000607902 574 ntBASIC15.07■□□□□ 0
SNRNP40Q96DI7 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SNRNP40Q96DI7 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
SNRNP40Q96DI7 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SNRNP40Q96DI7 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SNRNP40Q96DI7 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC15.07■□□□□ 0
SNRNP40Q96DI7 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SNRNP40Q96DI7 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.07■□□□□ 0
SNRNP40Q96DI7 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.07■□□□□ 0
SNRNP40Q96DI7 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 FOS-208ENST00000555686 1496 ntTSL 2 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
SNRNP40Q96DI7 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SNRNP40Q96DI7 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
SNRNP40Q96DI7 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
SNRNP40Q96DI7 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
SNRNP40Q96DI7 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC15.07■□□□□ 0
SNRNP40Q96DI7 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.06■□□□□ 0
SNRNP40Q96DI7 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
SNRNP40Q96DI7 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC15.06■□□□□ 0
SNRNP40Q96DI7 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
SNRNP40Q96DI7 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
SNRNP40Q96DI7 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 STARD13-205ENST00000439831 945 ntTSL 2 BASIC15.06■□□□□ 0
SNRNP40Q96DI7 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
SNRNP40Q96DI7 KRT18P34-201ENST00000488218 1270 ntBASIC15.06■□□□□ 0
SNRNP40Q96DI7 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC15.06■□□□□ 0
SNRNP40Q96DI7 AC073389.1-201ENST00000595595 795 ntBASIC15.06■□□□□ 0
SNRNP40Q96DI7 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
SNRNP40Q96DI7 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC15.06■□□□□ 0
SNRNP40Q96DI7 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
SNRNP40Q96DI7 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC15.06■□□□□ 0
SNRNP40Q96DI7 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC15.06■□□□□ 0
SNRNP40Q96DI7 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC15.06■□□□□ 0
SNRNP40Q96DI7 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
SNRNP40Q96DI7 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC15.06■□□□□ 0
SNRNP40Q96DI7 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
SNRNP40Q96DI7 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.06■□□□□ 0
SNRNP40Q96DI7 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC15.06■□□□□ 0
SNRNP40Q96DI7 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ 0
SNRNP40Q96DI7 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
SNRNP40Q96DI7 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC15.05■□□□□ 0
SNRNP40Q96DI7 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
SNRNP40Q96DI7 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC15.05■□□□□ 0
SNRNP40Q96DI7 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
SNRNP40Q96DI7 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC15.05■□□□□ 0
SNRNP40Q96DI7 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
SNRNP40Q96DI7 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
SNRNP40Q96DI7 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC15.05■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms